TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 2 844 unique TE insertions, which amount to a total of 5 348 occurrences among all samples.
• With any insertion appearing on 1.9 ± 0.32 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 2 674 ± 28.3.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 180 TE insertions.
• A total of 4 185 calls across cases.
• A mean prevalence of 1.9 ± 0.27.
• The median prevalence is 2.
• Each sample carries an average of 2 092.5 ± 17.7 TE insertions.

1.2 Genotyping

• 177 unique insertions that passed the stringent filtering. (8.1% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 224 total count (5.4% of filter-passing occurrences).

• 111 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 158 insertion counts.

• Of these fully wrong calls, 64 were only found on a single patient each (57.7% of the 111).

• The strict criteria missed calls for 60 unique insertions (2.8%).

• These mean a total of 60 occurrences, out of 4 185 calls that passed the stringent filter.

• 60 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	177 ( 8.1)	224 (5.4)	111 (158)	60 (2.8)	60 (4 185)	60
Lax	343 (12.1)	438 (8.2)	258 (353)	0 (0.0)	0 (5 348)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

586 TE insertions were found on all cases in homozygosis.

Click to show table with 586 rows.

Position	Length	Type	AF
CP068277.2:6 326 450	177	SINE (AluYb8)	1
CP068277.2:16 114 184	43	SINE (Alu)	1
CP068277.2:16 575 488	38	LINE (L1M1)	1
CP068277.2:20 992 773	316	SINE (AluYa5)	1
CP068277.2:38 352 287	74	SINE (FRAM)	1
CP068277.2:45 094 599	48	Retroposon (SVA_F)	1
CP068277.2:45 201 578	326	SINE (AluYb8)	1
CP068277.2:46 119 460	48	Retroposon (SVA_F)	1
CP068277.2:57 484 949	211	SINE (AluYk2)	1
CP068277.2:61 803 773	316	SINE (AluYc)	1
CP068277.2:65 547 882	309	SINE (AluY)	1
CP068277.2:76 472 686	280	SINE (AluYa5)	1
CP068277.2:78 954 901	307	SINE (AluYb9)	1
CP068277.2:79 721 146	38	LTR (THE1D-int)	1
CP068277.2:80 225 123	320	SINE (AluYa5)	1
CP068277.2:86 116 050	715	LINE (L1HS)	1
CP068277.2:99 356 767	110	Retroposon (SVA_A)	1
CP068277.2:112 237 049	55	LINE (L1HS)	1
CP068277.2:112 786 134	225	Retroposon (SVA_F)	1
CP068277.2:112 911 196	48	Retroposon (SVA_F)	1
CP068277.2:114 512 654	311	SINE (AluYa5)	1
CP068277.2:117 439 865	79	Retroposon (SVA_F)	1
CP068277.2:158 899 112	27	LINE (L1P)	1
CP068277.2:178 395 729	46	Retroposon (SVA_F)	1
CP068277.2:188 371 799	328	SINE (AluYb8)	1
CP068277.2:189 038 638	67	LTR (MSTA)	1
CP068277.2:192 243 097	40	LTR (LTR12D)	1
CP068277.2:203 274 785	87	LTR (MSTA)	1
CP068277.2:203 533 894	317	SINE (AluYg6)	1
CP068277.2:210 459 290	89	SINE (AluJb)	1
CP068277.2:210 706 521	195	Retroposon (SVA_E)	1
CP068277.2:214 109 436	50	Retroposon (SVA_F)	1
CP068277.2:217 069 272	325	SINE (AluYa5)	1
CP068277.2:221 722 389	173	Retroposon (SVA_A)	1
CP068277.2:221 931 096	328	SINE (AluYb8)	1
CP068277.2:225 302 830	99	Retroposon (SVA_F)	1
CP068277.2:239 055 414	282	LINE (L1P1)	1
CP068277.2:241 802 064	38	SINE (Alu)	1
CP068276.2:1 468 423	331	SINE (AluY)	1
CP068276.2:7 902 007	54	LTR (HERVH-int)	1
CP068276.2:10 932 617	343	Retroposon (SVA_E)	1
CP068276.2:13 196 975	46	LTR (HERVH-int)	1
CP068276.2:13 955 731	74	LTR (MER57-int)	1
CP068276.2:44 604 010	317	SINE (AluYa5)	1
CP068276.2:46 682 545	49	SINE (Alu)	1
CP068276.2:50 018 018	133	SINE (AluSc8)	1
CP068276.2:54 440 636	319	SINE (AluY)	1
CP068276.2:54 460 543	253	SINE (AluY)	1
CP068276.2:64 083 532	30	LTR (LTR7B)	1
CP068276.2:64 261 146	63	LTR (HERVH-int)	1
CP068276.2:70 930 166	31	SINE (Alu)	1
CP068276.2:78 743 214	314	SINE (AluYa5)	1
CP068276.2:99 438 516	46	LINE (L1P1)	1
CP068276.2:102 198 725	316	SINE (AluYa5)	1
CP068276.2:123 008 476	317	SINE (AluYa5)	1
CP068276.2:123 569 366	134	SINE (AluSp)	1
CP068276.2:123 667 376	329	SINE (AluYb8)	1
CP068276.2:123 849 426	327	LINE (L1MD)	1
CP068276.2:128 316 576	322	SINE (AluY)	1
CP068276.2:141 752 388	57	LINE (L1M2)	1
CP068276.2:143 122 440	327	SINE (AluY)	1
CP068276.2:144 249 299	151	SINE (AluSp)	1
CP068276.2:145 037 173	324	SINE (AluYb8)	1
CP068276.2:158 030 254	326	SINE (AluYb9)	1
CP068276.2:159 759 795	324	SINE (AluYa5)	1
CP068276.2:169 505 778	318	SINE (AluYb8)	1
CP068276.2:170 052 507	48	Retroposon (SVA_F)	1
CP068276.2:173 773 579	313	SINE (AluYa5)	1
CP068276.2:174 714 647	320	SINE (AluY)	1
CP068276.2:177 936 293	332	SINE (AluYb8)	1
CP068276.2:177 969 024	339	SINE (AluYb8)	1
CP068276.2:188 126 192	73	Retroposon (SVA_A)	1
CP068276.2:191 887 362	478	Retroposon (SVA_E)	1
CP068276.2:192 183 560	313	SINE (AluYa5)	1
CP068276.2:192 186 024	319	SINE (AluYa5)	1
CP068276.2:192 230 647	48	Retroposon (SVA_F)	1
CP068276.2:194 169 722	48	Retroposon (SVA_F)	1
CP068276.2:196 356 056	274	SINE (AluYa5)	1
CP068276.2:197 233 937	329	SINE (AluYb8)	1
CP068276.2:200 963 887	44	SINE (FRAM)	1
CP068276.2:201 256 725	968	LINE (L1HS)	1
CP068276.2:207 594 378	322	SINE (AluYb8)	1
CP068276.2:208 081 694	315	SINE (AluY)	1
CP068276.2:209 066 826	324	SINE (AluYb9)	1
CP068276.2:215 319 684	77	Retroposon (SVA_F)	1
CP068276.2:215 369 783	158	SINE (AluYb9)	1
CP068276.2:216 174 633	133	SINE (AluJo)	1
CP068276.2:223 302 437	127	Retroposon (SVA_F)	1
CP068276.2:226 634 805	245	SINE (AluYa5)	1
CP068276.2:233 687 447	149	SINE (AluSg)	1
CP068276.2:234 212 774	50	Retroposon (SVA_F)	1
CP068276.2:235 675 687	327	SINE (AluYb8)	1
CP068275.2:2 584 962	312	SINE (AluYa5)	1
CP068275.2:20 459 977	66	LTR (LTR25-int)	1
CP068275.2:28 800 764	330	SINE (AluY)	1
CP068275.2:29 581 534	322	SINE (AluYb8)	1
CP068275.2:32 005 645	94	LTR (LTR65)	1
CP068275.2:38 085 680	299	Retroposon (SVA_F)	1
CP068275.2:38 119 250	134	SINE (AluJb)	1
CP068275.2:50 054 724	268	SINE (AluYa5)	1
CP068275.2:50 341 806	97	Retroposon (SVA_F)	1
CP068275.2:50 833 539	39	Retroposon (SVA_C)	1
CP068275.2:50 871 694	344	SINE (AluYb8)	1
CP068275.2:65 941 603	35	LINE (L1PA6)	1
CP068275.2:80 303 273	45	LINE (L1PREC2)	1
CP068275.2:83 763 966	254	LINE (L1PA8A)	1
CP068275.2:96 460 083	73	Retroposon (SVA_A)	1
CP068275.2:101 102 912	79	LINE (L1P4)	1
CP068275.2:104 176 252	323	SINE (AluYb8)	1
CP068275.2:104 197 720	134	SINE (AluJb)	1
CP068275.2:114 228 328	335	SINE (AluY)	1
CP068275.2:114 926 706	49	LINE (L1P3)	1
CP068275.2:125 499 397	48	Retroposon (SVA_F)	1
CP068275.2:125 500 129	36	Retroposon (SVA_D)	1
CP068275.2:127 413 483	316	SINE (AluYa5)	1
CP068275.2:128 621 623	187	LTR (LTR16A1)	1
CP068275.2:132 084 525	48	Retroposon (SVA_F)	1
CP068275.2:132 210 422	310	SINE (AluYb8)	1
CP068275.2:136 876 079	57	LINE (L1MCa)	1
CP068275.2:143 907 036	50	LINE (L1PA12)	1
CP068275.2:145 833 710	401	Retroposon (SVA_E)	1
CP068275.2:147 504 053	77	LTR (LTR12D)	1
CP068275.2:148 281 506	322	SINE (AluY)	1
CP068275.2:150 907 914	41	LTR (HERVH-int)	1
CP068275.2:174 782 744	118	LTR (LTR12C)	1
CP068275.2:175 468 147	318	SINE (AluYa5)	1
CP068275.2:189 692 114	77	Retroposon (SVA_F)	1
CP068275.2:192 214 801	326	SINE (AluYa5)	1
CP068275.2:193 768 251	318	SINE (AluY)	1
CP068275.2:200 460 370	71	SINE (AluJb)	1
CP068274.2:2 568 818	317	SINE (AluYa5)	1
CP068274.2:4 004 477	80	LTR (HERVH-int)	1
CP068274.2:4 038 891	319	SINE (AluYb9)	1
CP068274.2:4 318 468	65	LTR (LTR12_v)	1
CP068274.2:9 950 436	248	SINE (AluY)	1
CP068274.2:9 954 701	316	SINE (AluYi6)	1
CP068274.2:15 773 375	496	Retroposon (SVA_F)	1
CP068274.2:16 374 994	121	Retroposon (SVA_D)	1
CP068274.2:34 499 227	331	SINE (AluYa5)	1
CP068274.2:36 292 569	314	SINE (AluYb8)	1
CP068274.2:39 378 562	322	SINE (AluYb8)	1
CP068274.2:39 675 502	162	SINE (AluSx)	1
CP068274.2:56 743 512	36	Retroposon (SVA_B)	1
CP068274.2:57 814 201	147	Retroposon (SVA_A)	1
CP068274.2:58 620 850	323	SINE (AluYb8)	1
CP068274.2:60 123 691	124	SINE (AluYb8)	1
CP068274.2:61 601 364	101	SINE (AluYa5)	1
CP068274.2:73 097 163	175	Retroposon (SVA_A)	1
CP068274.2:73 581 961	183	LINE (L1PA2)	1
CP068274.2:75 446 974	318	SINE (AluYa5)	1
CP068274.2:85 038 637	318	SINE (AluYa5)	1
CP068274.2:85 588 188	304	SINE (AluY)	1
CP068274.2:88 878 813	314	SINE (AluY)	1
CP068274.2:99 966 112	319	SINE (AluYb9)	1
CP068274.2:106 156 930	45	SINE (AluSz6)	1
CP068274.2:108 421 359	48	Retroposon (SVA_F)	1
CP068274.2:109 710 152	64	LINE (L1M4c)	1
CP068274.2:111 379 802	39	Retroposon (SVA_A)	1
CP068274.2:113 652 393	31	LINE (L1P4)	1
CP068274.2:125 038 429	37	LTR (MLT1A1)	1
CP068274.2:137 536 644	412	LTR (HERVL40-int)	1
CP068274.2:138 329 412	314	SINE (AluY)	1
CP068274.2:139 713 216	57	SINE (AluSp)	1
CP068274.2:143 337 477	151	SINE (AluYa5)	1
CP068274.2:153 984 112	98	Retroposon (SVA_F)	1
CP068274.2:154 329 485	41	SINE (Alu)	1
CP068274.2:154 538 668	126	Retroposon (SVA_F)	1
CP068274.2:154 686 326	82	SINE (AluYc)	1
CP068274.2:168 367 484	123	Retroposon (SVA_F)	1
CP068274.2:168 367 837	39	Retroposon (SVA_C)	1
CP068274.2:168 615 609	326	SINE (AluYa5)	1
CP068274.2:171 244 192	111	LTR (MER4A)	1
CP068274.2:176 462 509	319	SINE (AluYi6)	1
CP068274.2:176 567 723	316	SINE (AluY)	1
CP068274.2:177 952 805	327	SINE (AluY)	1
CP068274.2:182 677 404	315	SINE (AluYi6)	1
CP068274.2:186 157 092	181	LTR (HERVH-int)	1
CP068274.2:186 384 582	39	Retroposon (SVA_C)	1
CP068274.2:189 838 124	54	SINE (AluJb)	1
CP068273.2:12 123 869	302	SINE (AluYa5)	1
CP068273.2:12 256 876	29	LINE (L1PA14)	1
CP068273.2:13 792 771	314	SINE (AluYa5)	1
CP068273.2:24 017 957	286	SINE (AluY)	1
CP068273.2:25 758 140	221	LINE (L1P1)	1
CP068273.2:27 677 538	122	SINE (AluJb)	1
CP068273.2:29 034 806	73	Retroposon (SVA_A)	1
CP068273.2:38 033 738	92	LTR (Harlequin-int)	1
CP068273.2:40 437 907	307	SINE (AluYa5)	1
CP068273.2:43 233 657	86	Retroposon (SVA_F)	1
CP068273.2:46 415 440	334	SINE (AluY)	1
CP068273.2:66 799 023	345	Retroposon (SVA_F)	1
CP068273.2:77 294 343	50	Retroposon (SVA_F)	1
CP068273.2:77 456 269	295	SINE (AluYd8)	1
CP068273.2:92 669 299	337	SINE (AluYa5)	1
CP068273.2:100 778 993	312	SINE (AluYb8)	1
CP068273.2:103 260 600	40	LTR (LTR12E)	1
CP068273.2:104 621 581	46	SINE (Alu)	1
CP068273.2:108 350 701	102	LINE (L1M5)	1
CP068273.2:109 193 523	311	SINE (AluYa5)	1
CP068273.2:111 960 940	186	SINE (AluYc)	1
CP068273.2:116 441 257	27	LTR (LTR10F)	1
CP068273.2:118 013 084	305	SINE (AluY)	1
CP068273.2:121 495 295	313	SINE (AluYa5)	1
CP068273.2:125 544 797	317	SINE (AluYk2)	1
CP068273.2:138 669 937	65	LTR (LTR12)	1
CP068273.2:139 924 858	295	SINE (AluSx)	1
CP068273.2:141 287 230	91	SINE (FLAM_C)	1
CP068273.2:155 191 230	317	SINE (AluYb8)	1
CP068273.2:156 028 237	117	LINE (L1HS)	1
CP068273.2:160 223 574	316	SINE (AluYg6)	1
CP068273.2:161 633 327	329	SINE (AluYb8)	1
CP068273.2:180 746 045	174	SINE (AluY)	1
CP068273.2:181 314 056	267	LINE (L1P1)	1
CP068272.2:5 704 809	325	Retroposon (SVA_F)	1
CP068272.2:7 310 938	81	LTR (LTR12D)	1
CP068272.2:10 902 109	134	SINE (AluSz)	1
CP068272.2:21 225 613	62	SINE (AluYb8)	1
CP068272.2:23 848 830	322	SINE (AluY)	1
CP068272.2:26 622 355	332	SINE (AluY)	1
CP068272.2:28 094 492	330	SINE (AluYb8)	1
CP068272.2:30 339 365	39	Retroposon (SVA_D)	1
CP068272.2:32 628 076	315	SINE (AluYa5)	1
CP068272.2:36 183 676	101	LTR (LTR12C)	1
CP068272.2:36 767 743	98	Retroposon (SVA_F)	1
CP068272.2:38 355 201	136	LTR (MER11A)	1
CP068272.2:38 788 666	48	Retroposon (SVA_F)	1
CP068272.2:42 430 462	160	SINE (AluSg4)	1
CP068272.2:43 757 249	317	SINE (AluYa5)	1
CP068272.2:45 835 182	326	SINE (AluY)	1
CP068272.2:53 623 893	313	SINE (AluYa5)	1
CP068272.2:62 724 632	133	SINE (AluSp)	1
CP068272.2:68 954 952	318	SINE (AluYa5)	1
CP068272.2:86 651 703	331	SINE (AluY)	1
CP068272.2:103 468 739	127	LTR (HERVH-int)	1
CP068272.2:105 078 139	324	SINE (AluY)	1
CP068272.2:109 131 038	272	Retroposon (SVA_A)	1
CP068272.2:115 951 898	105	SINE (AluSc)	1
CP068272.2:123 028 920	103	LINE (L2a)	1
CP068272.2:126 080 528	40	LTR (LTR12C)	1
CP068272.2:142 199 746	131	LTR (LTR12)	1
CP068272.2:159 090 611	39	LTR (LTR8)	1
CP068272.2:167 189 769	54	DNA (Tigger3c)	1
CP068271.2:2 382 174	77	Retroposon (SVA_F)	1
CP068271.2:12 396 185	31	SINE (AluSg)	1
CP068271.2:15 262 062	60	LTR (MER89)	1
CP068271.2:23 776 953	125	Retroposon (SVA_F)	1
CP068271.2:29 929 681	37	LTR (HERVH-int)	1
CP068271.2:38 447 505	50	LTR (LTR1)	1
CP068271.2:38 626 104	322	SINE (AluYa5)	1
CP068271.2:38 630 323	333	SINE (AluYb8)	1
CP068271.2:45 083 204	325	SINE (AluYb8)	1
CP068271.2:48 018 075	322	SINE (AluYa5)	1
CP068271.2:52 864 846	336	LINE (L1MCa)	1
CP068271.2:52 883 012	354	LINE (L1HS)	1
CP068271.2:56 334 427	323	SINE (AluYb8)	1
CP068271.2:56 369 757	300	SINE (AluYa5)	1
CP068271.2:68 364 737	319	SINE (AluYb8)	1
CP068271.2:75 037 069	48	Retroposon (SVA_F)	1
CP068271.2:78 216 802	318	SINE (AluYa5)	1
CP068271.2:82 300 766	294	SINE (AluYb8)	1
CP068271.2:84 473 621	314	SINE (AluYb8)	1
CP068271.2:84 568 344	317	SINE (AluYg6)	1
CP068271.2:85 121 772	186	SINE (AluYc)	1
CP068271.2:85 626 331	317	SINE (AluY)	1
CP068271.2:91 992 921	206	Retroposon (SVA_F)	1
CP068271.2:103 838 055	128	SINE (AluJb)	1
CP068271.2:110 968 119	328	SINE (AluYb8)	1
CP068271.2:115 628 405	310	SINE (AluYa5)	1
CP068271.2:119 569 637	300	SINE (AluYa5)	1
CP068271.2:119 758 768	317	SINE (AluYe5)	1
CP068271.2:121 741 949	31	SINE (Alu)	1
CP068271.2:122 631 790	80	LTR (HERVH-int)	1
CP068271.2:125 458 018	281	SINE (AluYk2)	1
CP068271.2:126 339 965	167	LTR (THE1-int)	1
CP068271.2:129 881 314	242	SINE (AluYa5)	1
CP068271.2:130 830 383	318	SINE (AluSx)	1
CP068271.2:136 812 007	329	SINE (AluYa5)	1
CP068271.2:146 522 789	32	LINE (L1P1)	1
CP068271.2:149 923 454	135	SINE (AluSz)	1
CP068271.2:150 461 892	48	Retroposon (SVA_F)	1
CP068271.2:153 713 300	130	SINE (AluSx)	1
CP068271.2:158 746 778	338	SINE (AluYb8)	1
CP068270.2:1 867 928	45	SINE (Alu)	1
CP068270.2:9 270 409	319	SINE (AluYa5)	1
CP068270.2:17 372 585	320	SINE (AluYk3)	1
CP068270.2:34 580 253	67	LINE (L1M3)	1
CP068270.2:40 175 476	60	LINE (L1MA3)	1
CP068270.2:40 184 959	324	SINE (AluYa5)	1
CP068270.2:41 686 987	332	SINE (AluYb8)	1
CP068270.2:51 522 000	311	SINE (AluYa5)	1
CP068270.2:51 532 733	48	Retroposon (SVA_F)	1
CP068270.2:51 604 354	118	LTR (LTR12C)	1
CP068270.2:54 436 680	313	SINE (AluYb8)	1
CP068270.2:60 716 533	316	SINE (AluYa5)	1
CP068270.2:88 868 126	317	SINE (AluYa5)	1
CP068270.2:89 463 045	96	DNA (MER53)	1
CP068270.2:90 822 117	48	Retroposon (SVA_F)	1
CP068270.2:93 464 949	163	LINE (L1PB2)	1
CP068270.2:96 503 803	231	SINE (AluJb)	1
CP068270.2:98 966 642	40	Retroposon (SVA_D)	1
CP068270.2:107 844 447	325	SINE (AluYb8)	1
CP068270.2:128 153 263	325	SINE (AluYb8)	1
CP068270.2:128 443 757	46	Retroposon (SVA_F)	1
CP068270.2:129 246 518	77	Retroposon (SVA_F)	1
CP068270.2:132 464 747	322	SINE (AluYa5)	1
CP068270.2:137 820 678	330	SINE (AluYb8)	1
CP068269.2:1 717 408	72	SINE (AluSc)	1
CP068269.2:6 795 504	39	Retroposon (SVA_D)	1
CP068269.2:7 855 153	326	SINE (AluYb9)	1
CP068269.2:22 072 341	76	SINE (AluSg4)	1
CP068269.2:30 020 771	69	LINE (L1M3)	1
CP068269.2:30 361 586	314	SINE (AluY)	1
CP068269.2:31 255 451	209	LTR (MER34B-int)	1
CP068269.2:32 923 481	65	LTR (LTR12)	1
CP068269.2:33 442 084	37	Retroposon (SVA_F)	1
CP068269.2:34 156 745	66	Retroposon (SVA_F)	1
CP068269.2:34 293 360	332	SINE (AluSp)	1
CP068269.2:35 940 130	31	SINE (Alu)	1
CP068269.2:38 265 890	78	Retroposon (SVA_A)	1
CP068269.2:41 137 102	322	SINE (AluYa5)	1
CP068269.2:81 331 129	317	SINE (AluYa5)	1
CP068269.2:84 265 383	48	SINE (Alu)	1
CP068269.2:88 666 159	315	SINE (AluYb8)	1
CP068269.2:96 285 775	31	SINE (Alu)	1
CP068269.2:97 437 226	307	SINE (AluY)	1
CP068269.2:104 997 511	137	Retroposon (SVA_F)	1
CP068269.2:104 997 678	139	Retroposon (SVA_F)	1
CP068269.2:105 092 050	53	SINE (AluSx4)	1
CP068269.2:109 968 532	39	Retroposon (SVA_F)	1
CP068269.2:112 443 781	81	SINE (AluSz)	1
CP068269.2:119 632 661	61	SINE (AluYa5)	1
CP068269.2:119 842 404	313	SINE (AluYk2)	1
CP068269.2:121 668 497	307	SINE (AluYa5)	1
CP068269.2:138 384 259	298	LINE (L1M4)	1
CP068269.2:138 516 231	39	SINE (AluSp)	1
CP068268.2:3 057 186	34	SINE (AluYh3)	1
CP068268.2:3 530 702	315	SINE (AluYg6)	1
CP068268.2:14 455 848	327	SINE (AluYa5)	1
CP068268.2:19 127 408	330	SINE (AluY)	1
CP068268.2:21 756 234	34	SINE (AluJb)	1
CP068268.2:23 506 880	330	SINE (AluYb8)	1
CP068268.2:26 090 723	315	SINE (AluY)	1
CP068268.2:26 098 120	45	SINE (Alu)	1
CP068268.2:27 385 781	391	LINE (L1PA7)	1
CP068268.2:29 201 484	188	LTR (MLT1F-int)	1
CP068268.2:30 638 183	126	SINE (AluSx)	1
CP068268.2:46 272 906	39	Retroposon (SVA_C)	1
CP068268.2:52 951 752	275	SINE (AluYk2)	1
CP068268.2:70 106 724	315	SINE (AluYb8)	1
CP068268.2:71 500 997	80	Retroposon (SVA_A)	1
CP068268.2:72 746 653	48	Retroposon (SVA_F)	1
CP068268.2:80 805 468	154	SINE (AluYk2)	1
CP068268.2:88 539 556	142	SINE (AluYa5)	1
CP068268.2:97 658 629	311	SINE (AluYa5)	1
CP068268.2:97 822 182	48	Retroposon (SVA_F)	1
CP068268.2:102 861 010	320	SINE (AluYa5)	1
CP068268.2:102 921 189	141	Retroposon (SVA_F)	1
CP068268.2:107 018 352	142	SINE (AluJb)	1
CP068268.2:108 118 466	320	SINE (AluYa5)	1
CP068268.2:115 681 774	49	Retroposon (SVA_F)	1
CP068268.2:116 480 342	28	LINE (L1P1)	1
CP068268.2:120 078 060	39	Retroposon (SVA_C)	1
CP068268.2:131 025 575	97	LINE (L1PA7)	1
CP068267.2:4 244 313	47	LINE (L1M2)	1
CP068267.2:4 348 569	156	Retroposon (SVA_B)	1
CP068267.2:8 949 899	318	SINE (AluYk2)	1
CP068267.2:22 361 771	124	LINE (L1PA16)	1
CP068267.2:22 533 230	115	LINE (L1M2)	1
CP068267.2:23 457 692	313	SINE (AluYa5)	1
CP068267.2:25 682 675	345	SINE (AluYa5)	1
CP068267.2:27 776 457	331	LTR (MER61E)	1
CP068267.2:31 266 980	316	SINE (AluYb8)	1
CP068267.2:47 253 984	175	Retroposon (SVA_F)	1
CP068267.2:48 903 168	348	LINE (L1HS)	1
CP068267.2:55 491 270	337	SINE (AluY)	1
CP068267.2:56 473 791	316	SINE (AluYg6)	1
CP068267.2:57 894 100	117	Retroposon (SVA_B)	1
CP068267.2:57 956 966	131	SINE (AluYa5)	1
CP068267.2:58 403 047	326	SINE (AluYb8)	1
CP068267.2:75 339 542	77	Retroposon (SVA_F)	1
CP068267.2:79 061 406	55	LTR (ERVL-B4-int)	1
CP068267.2:80 466 705	125	LTR (LTR12D)	1
CP068267.2:82 117 603	40	Retroposon (SVA_C)	1
CP068267.2:83 069 825	39	Retroposon (SVA_B)	1
CP068267.2:95 142 638	41	SINE (Alu)	1
CP068267.2:96 505 968	312	SINE (AluYk3)	1
CP068267.2:96 512 808	42	LTR (LTR46)	1
CP068267.2:110 116 232	326	SINE (AluY)	1
CP068267.2:118 715 549	133	SINE (AluSx)	1
CP068267.2:130 127 238	452	Retroposon (SVA_E)	1
CP068266.2:3 101 640	128	Retroposon (SVA_F)	1
CP068266.2:6 807 792	255	SINE (AluYk2)	1
CP068266.2:8 198 775	48	Retroposon (SVA_F)	1
CP068266.2:8 608 368	115	Retroposon (SVA_A)	1
CP068266.2:8 608 846	47	Retroposon (SVA_F)	1
CP068266.2:25 181 210	328	SINE (AluY)	1
CP068266.2:29 284 322	34	LINE (L1P1)	1
CP068266.2:30 029 848	200	SINE (AluYa5)	1
CP068266.2:30 090 243	425	DNA (Tigger3b)	1
CP068266.2:38 940 562	338	LINE (L1P1)	1
CP068266.2:41 239 964	344	LINE (L1P3)	1
CP068266.2:41 631 622	38	LINE (L1P1)	1
CP068266.2:43 644 100	126	Retroposon (SVA_F)	1
CP068266.2:44 984 370	310	SINE (AluYa5)	1
CP068266.2:48 293 796	97	Retroposon (SVA_F)	1
CP068266.2:48 294 127	36	Retroposon (SVA_F)	1
CP068266.2:54 455 313	39	Retroposon (SVA_D)	1
CP068266.2:57 624 597	41	LTR (LTR12C)	1
CP068266.2:57 657 848	313	SINE (AluYa5)	1
CP068266.2:58 805 540	321	SINE (AluYb8)	1
CP068266.2:60 632 641	282	SINE (AluYb8)	1
CP068266.2:70 181 568	46	Retroposon (SVA_F)	1
CP068266.2:71 354 899	23	LTR (LTR12E)	1
CP068266.2:77 071 800	174	LINE (L1P1)	1
CP068266.2:86 830 416	145	SINE (AluSx)	1
CP068266.2:87 458 390	319	SINE (AluY)	1
CP068266.2:93 946 035	316	SINE (AluY)	1
CP068266.2:94 256 702	320	SINE (AluYa5)	1
CP068266.2:96 952 164	313	SINE (AluYa5)	1
CP068266.2:97 074 951	330	SINE (AluYb8)	1
CP068266.2:101 881 504	101	SINE (AluYb8)	1
CP068266.2:104 285 274	50	Retroposon (SVA_F)	1
CP068266.2:104 884 820	187	SINE (AluYb9)	1
CP068266.2:121 990 164	462	Retroposon (SVA_F)	1
CP068266.2:124 855 294	309	SINE (AluJb)	1
CP068266.2:126 723 341	319	SINE (AluYb8)	1
CP068266.2:129 049 321	78	LTR (LTR1C3)	1
CP068265.2:13 715 682	197	SINE (AluYb8)	1
CP068265.2:17 820 623	288	SINE (AluYb8)	1
CP068265.2:19 743 748	50	LTR (LTR3B_v)	1
CP068265.2:20 808 668	316	SINE (AluYa5)	1
CP068265.2:21 153 369	313	SINE (AluYa5)	1
CP068265.2:24 474 413	135	SINE (AluYa5)	1
CP068265.2:28 214 233	66	LTR (LTR12)	1
CP068265.2:29 823 844	319	SINE (AluYa5)	1
CP068265.2:36 827 231	337	SINE (AluYb9)	1
CP068265.2:45 778 723	328	SINE (AluYa5)	1
CP068265.2:49 104 639	47	LINE (L1PA10)	1
CP068265.2:51 294 855	39	Retroposon (SVA_A)	1
CP068265.2:56 231 795	119	SINE (AluY)	1
CP068265.2:57 263 121	290	SINE (AluYb9)	1
CP068265.2:59 936 546	390	LINE (L1HS)	1
CP068265.2:62 171 725	328	SINE (AluYa5)	1
CP068265.2:68 684 135	328	SINE (AluYa5)	1
CP068265.2:77 302 799	313	SINE (AluYa5)	1
CP068265.2:81 838 300	307	SINE (AluYa5)	1
CP068265.2:85 705 616	305	SINE (AluYa5)	1
CP068265.2:85 943 033	291	SINE (AluYa5)	1
CP068265.2:88 073 850	315	SINE (AluYa5)	1
CP068265.2:93 800 756	144	SINE (AluYa5)	1
CP068265.2:98 181 349	135	SINE (AluYk2)	1
CP068265.2:107 293 494	316	SINE (AluYb8)	1
CP068265.2:109 388 985	315	SINE (AluYb8)	1
CP068265.2:109 862 682	128	LTR (LTR12C)	1
CP068265.2:109 863 304	40	LTR (LTR12E)	1
CP068265.2:110 705 076	70	SINE (Alu)	1
CP068264.2:4 080 751	328	SINE (AluYb8)	1
CP068264.2:4 176 442	306	SINE (AluYa5)	1
CP068264.2:8 666 687	179	SINE (AluYb8)	1
CP068264.2:8 922 130	78	LINE (L1P1)	1
CP068264.2:9 347 163	85	LINE (L1P1)	1
CP068264.2:17 906 483	330	SINE (AluY)	1
CP068264.2:22 030 072	439	LINE (L1HS)	1
CP068264.2:24 287 282	97	LINE (L1M1)	1
CP068264.2:28 277 165	36	Retroposon (SVA_D)	1
CP068264.2:28 610 960	298	SINE (AluYa5)	1
CP068264.2:28 682 029	316	SINE (AluY)	1
CP068264.2:29 128 780	87	SINE (AluJo)	1
CP068264.2:29 131 238	312	SINE (AluY)	1
CP068264.2:31 745 103	39	Retroposon (SVA_C)	1
CP068264.2:37 792 967	513	LINE (L1P1)	1
CP068264.2:38 736 235	310	SINE (AluYa5)	1
CP068264.2:45 171 772	326	SINE (AluYb8)	1
CP068264.2:67 754 433	185	SINE (AluYe5)	1
CP068264.2:76 765 409	281	SINE (AluYa5)	1
CP068264.2:80 383 842	314	SINE (AluY)	1
CP068264.2:92 910 435	53	SINE (Alu)	1
CP068263.2:18 206 744	28	DNA (Tigger3c)	1
CP068263.2:20 376 616	44	SINE (Alu)	1
CP068263.2:21 696 325	308	SINE (AluYa5)	1
CP068263.2:33 461 719	125	Retroposon (SVA_F)	1
CP068263.2:38 489 396	36	Retroposon (SVA_F)	1
CP068263.2:64 197 247	323	SINE (AluYb9)	1
CP068263.2:65 174 494	318	SINE (AluYa5)	1
CP068263.2:67 062 769	57	SINE (Alu)	1
CP068263.2:77 681 654	287	SINE (AluSx)	1
CP068263.2:80 969 475	321	SINE (AluYa5)	1
CP068263.2:83 433 722	325	SINE (AluYk2)	1
CP068263.2:93 349 076	291	SINE (AluYa5)	1
CP068262.2:480 325	310	SINE (AluSx)	1
CP068262.2:832 869	330	SINE (AluY)	1
CP068262.2:3 038 242	110	SINE (AluSx3)	1
CP068262.2:4 839 788	41	SINE (Alu)	1
CP068262.2:5 324 682	319	SINE (AluYa5)	1
CP068262.2:15 116 749	85	SINE (AluSc)	1
CP068262.2:31 491 932	465	Retroposon (SVA_F)	1
CP068262.2:62 994 200	43	SINE (AluJb)	1
CP068262.2:63 015 018	318	SINE (AluYa5)	1
CP068262.2:64 052 598	321	SINE (AluYa5)	1
CP068262.2:64 555 274	134	SINE (AluSz)	1
CP068262.2:64 559 334	56	SINE (AluSx3)	1
CP068262.2:68 772 351	63	LTR (HERVH-int)	1
CP068262.2:88 229 528	36	DNA (Tigger3c)	1
CP068261.2:4 300 934	259	LINE (L1HS)	1
CP068261.2:16 232 917	317	SINE (AluYe5)	1
CP068261.2:36 143 032	46	Retroposon (SVA_F)	1
CP068261.2:38 008 692	192	SINE (AluYc)	1
CP068261.2:47 114 918	39	Retroposon (SVA_D)	1
CP068261.2:47 115 270	39	Retroposon (SVA_C)	1
CP068261.2:49 989 179	224	Retroposon (SVA_F)	1
CP068261.2:53 188 839	321	SINE (AluYa5)	1
CP068261.2:53 829 064	311	SINE (AluYa5)	1
CP068261.2:61 421 223	48	Retroposon (SVA_F)	1
CP068261.2:68 170 924	159	LTR (LTR12C)	1
CP068261.2:73 573 179	318	SINE (AluYa5)	1
CP068261.2:75 907 696	47	SINE (AluJr4)	1
CP068261.2:75 935 935	316	SINE (AluYb8)	1
CP068261.2:78 886 239	313	SINE (AluYg6)	1
CP068260.2:3 032 121	146	SINE (AluYe5)	1
CP068260.2:8 797 339	112	SINE (AluJo)	1
CP068260.2:9 045 402	41	LTR (HERVIP10F-int)	1
CP068260.2:9 097 966	101	LTR (LTR12C)	1
CP068260.2:9 388 660	334	SINE (AluJb)	1
CP068260.2:14 173 524	36	Retroposon (SVA_F)	1
CP068260.2:22 276 125	316	SINE (AluYb8)	1
CP068260.2:35 273 621	317	SINE (AluYa5)	1
CP068260.2:45 956 220	80	SINE (AluSq)	1
CP068260.2:53 996 308	73	LINE (L1PBa)	1
CP068260.2:54 439 434	167	LINE (L1HS)	1
CP068260.2:57 843 464	383	LTR (LTR12C)	1
CP068260.2:61 819 865	232	SINE (AluYa5)	1
CP068260.2:63 221 681	321	SINE (AluY)	1
CP068260.2:66 072 639	338	SINE (AluYa5)	1
CP068260.2:68 770 940	323	SINE (AluYb9)	1
CP068260.2:77 079 849	311	SINE (AluYk2)	1
CP068259.2:646 264	72	SINE (AluSp)	1
CP068259.2:6 913 159	323	SINE (AluYb8)	1
CP068259.2:12 746 120	175	Retroposon (SVA_F)	1
CP068259.2:13 829 910	126	Retroposon (SVA_F)	1
CP068259.2:16 391 116	140	SINE (AluJb)	1
CP068259.2:17 856 398	164	SINE (AluSx4)	1
CP068259.2:18 265 771	319	SINE (AluSx)	1
CP068259.2:23 988 183	49	Retroposon (SVA_F)	1
CP068259.2:24 393 776	69	LTR (MER11B)	1
CP068259.2:36 653 353	143	Retroposon (SVA_F)	1
CP068259.2:40 925 916	77	Retroposon (SVA_F)	1
CP068259.2:53 674 286	100	SINE (AluJb)	1
CP068259.2:54 049 533	135	SINE (AluSx)	1
CP068259.2:56 390 789	85	SINE (AluYa5)	1
CP068259.2:56 876 654	35	SINE (Alu)	1
CP068259.2:59 694 584	318	SINE (AluYb8)	1
CP068258.2:996 590	102	LINE (L2a)	1
CP068258.2:3 049 605	47	Retroposon (SVA_F)	1
CP068258.2:5 079 951	283	SINE (AluY)	1
CP068258.2:5 422 563	49	LTR (MSTB)	1
CP068258.2:5 544 074	305	SINE (AluYc)	1
CP068258.2:5 544 134	290	SINE (AluYc)	1
CP068258.2:37 925 585	291	SINE (AluSx)	1
CP068258.2:52 135 817	36	SINE (Alu)	1
CP068258.2:53 725 240	316	SINE (AluYa5)	1
CP068258.2:62 091 491	125	SINE (AluSc)	1
CP068258.2:63 187 710	320	SINE (AluYb8)	1
CP068257.2:22 749 626	325	SINE (AluYb8)	1
CP068257.2:42 828 950	134	SINE (AluSz)	1
CP068256.2:18 235 398	357	SINE (AluYb8)	1
CP068256.2:31 488 198	334	SINE (AluY)	1
CP068256.2:32 276 538	316	SINE (AluY)	1
CP068256.2:32 611 946	99	LTR (MER11C)	1
CP068255.2:295 081	165	SINE (AluSx)	1
CP068255.2:3 778 904	57	LINE (L1PB1)	1
CP068255.2:14 286 653	46	DNA (MER5B)	1
CP068255.2:24 293 369	129	Retroposon (SVA_F)	1
CP068255.2:25 517 581	334	SINE (AluYb8)	1
CP068255.2:27 034 647	90	LTR (MER61C)	1
CP068255.2:28 925 984	49	Retroposon (SVA_F)	1
CP068255.2:45 683 112	125	Retroposon (SVA_F)	1
CP068255.2:52 216 963	324	SINE (AluYb8)	1
CP068255.2:83 656 505	86	LINE (L1MC5)	1
CP068255.2:89 731 271	242	SINE (AluYa5)	1
CP068255.2:135 308 659	303	Retroposon (SVA_F)	1
CP068255.2:135 308 739	304	Retroposon (SVA_F)	1
CP068255.2:136 580 332	51	LTR (LTR7)	1
CP068255.2:151 099 729	315	SINE (AluY)	1
CP086569.2:306 952	165	SINE (AluSx)	1
CP086569.2:736 248	133	SINE (AluJb)	1
CP086569.2:1 168 077	333	SINE (AluSx)	1

• 1 962 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	6	12	10
	TcMar	6	12	11
LINE	L1	101	200	199
	L2	3	6	6
LTR	ERV1	31	59	58
	ERVK	5	8	8
	ERVL	10	20	20
Retroposon	SVA	127	246	234
SINE	Alu	787	1 570	1 566
	MIR	1	2	2
Total	-	1 077	2 135	2 114

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	12	24	20
SVA B	2	4	4
SVA C	4	7	7
SVA D	4	8	8
SVA E	17	33	33
SVA F	86	166	158
SVA F1	2	4	4
Total	127	246	234

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	2	4	4
AluJb	16	31	31
AluJo	4	8	7
AluJr4	1	2	2
AluSc	3	6	6
AluSc8	3	6	6
AluSg	10	20	20
AluSg4	2	4	3
AluSp	5	10	10
AluSq	4	8	8
AluSx	33	65	65
AluSx3	3	6	6
AluSx4	3	6	6
AluSz	5	10	9
AluSz6	3	6	6
AluY	152	303	302
AluYa5	253	505	505
AluYa8	7	14	14
AluYb8	146	292	292
AluYb9	24	48	48
AluYc	14	28	28
AluYd8	3	6	6
AluYe5	20	40	40
AluYf1	1	2	2
AluYg6	16	32	32
AluYh7	4	8	8
AluYi6	4	8	8
AluYj4	2	4	4
AluYk11	3	6	6
AluYk12	3	6	6
AluYk2	28	56	56
AluYk3	5	10	10
AluYk4	1	2	2
FLAM C	2	4	4
FRAM	2	4	4
Total	787	1 570	1 566

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
L1HS	51	101	100
L1M	1	2	2
L1M2	3	6	6
L1M3	1	2	2
L1M3b	1	2	2
L1M4	1	2	2
L1M5	2	3	3
L1MA5	1	2	2
L1MA7	1	2	2
L1MB8	1	2	2
L1MC	2	4	4
L1MC3	1	2	2
L1MC4	1	2	2
L1MC5	1	2	2
L1MEc	1	2	2
L1P1	5	10	10
L1P2	2	4	4
L1P3	4	8	8
L1P3b	1	2	2
L1P4	1	2	2
L1PA10	1	2	2
L1PA11	1	2	2
L1PA12	1	2	2
L1PA13	1	2	2
L1PA16	2	4	4
L1PA2	4	8	8
L1PA3	1	2	2
L1PA7	1	2	2
L1PB	2	4	4
L1PB1	1	2	2
L1PBa	1	2	2
L1PBa1	2	4	4
L1PBb	1	2	2
Total	101	200	199

2.1.2 Class II TEs on gene sequences

Click to show table with 1069 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068255.2:5 749 733	113	SINE (Alu)	NLGN4X	Intron	2
CP068255.2:7 494 814	158	SINE (Alu)	LOC107985675	Intron	2
CP068255.2:9 615 362	270	SINE (Alu)	WWC3	Intron	2
CP068255.2:18 657 080	54	SINE (Alu)	ADGRG2	Intron	2
CP068255.2:22 237 816	314	SINE (Alu)	PTCHD1-AS	Intron	2
CP068255.2:24 293 369	129	Retroposon (SVA)	POLA1	Intron	2
CP068255.2:28 925 984	49	Retroposon (SVA)	IL1RAPL1	Intron	2
CP068255.2:32 788 943	323	SINE (Alu)	DMD	Intron	2
CP068255.2:39 481 305	337	SINE (Alu)	BCOR	Intron	2
CP068255.2:83 656 505	86	LINE (L1)	SATL1	Intron	2
CP068255.2:83 683 173	323	SINE (Alu)	ZNF711	Intron	2
CP068255.2:84 713 986	317	SINE (Alu)	DACH2	Intron	2
CP068255.2:90 623 038	135	SINE (Alu)	PCDH11X	Intron	2
CP068255.2:97 133 746	70	LINE (L1)	LINC03077	Intron	2
CP068255.2:100 344 903	51	LINE (L1)	ZMAT1	Intron	2
CP068255.2:102 352 991	329	SINE (Alu)	TMSB15B-AS1	Intron	2
CP068255.2:103 670 854	148	LTR (ERV1)	IL1RAPL2	Intron	2
CP068255.2:110 764 583	6 057	LINE (L1)	RTL4	Intron	2
CP068255.2:130 112 151	310	SINE (Alu)	FIRRE	Intron	2
CP068255.2:151 099 729	315	SINE (Alu)	NSDHL	Intron	2
CP068255.2:247 908	165	SINE (Alu)	LOC102724521	Intron	1
CP068255.2:295 081	165	SINE (Alu)	LOC102724521	Intron	2
CP068256.2:7 583 739	317	SINE (Alu)	LOC128966699	Promoter	2
CP068256.2:18 235 398	357	SINE (Alu)	SLC25A18	Intron	2
CP068256.2:18 700 162	324	SINE (Alu)	LINC01634	Promoter	2
CP068256.2:24 409 922	308	SINE (Alu)	GSTT4	Intron	2
CP068256.2:25 461 789	295	SINE (Alu)	KIAA1671	Intron	2
CP068256.2:25 532 879	97	SINE (Alu)	KIAA1671	Intron	2
CP068256.2:27 234 737	2 644	Retroposon (SVA)	MIATNB	Intron	2
CP068256.2:29 242 941	313	SINE (Alu)	CCDC117	Intron	2
CP068256.2:30 535 147	329	SINE (Alu)	HORMAD2-AS1	Intron	2
CP068256.2:32 056 335	298	Retroposon (SVA)	SFI1	Intron	1
CP068256.2:32 276 538	316	SINE (Alu)	DEPDC5	Intron	2
CP068256.2:32 887 860	292	SINE (Alu)	BPIFC	Intron	2
CP068256.2:32 895 332	328	SINE (Alu)	BPIFC	Intron	2
CP068256.2:34 131 369	121	SINE (Alu)	LARGE1	Intron	2
CP068256.2:34 820 706	63	SINE (Alu)	LOC105373012	Promoter	2
CP068256.2:41 793 756	314	SINE (Alu)	ZC3H7B	Intron	2
CP068256.2:42 223 412	317	SINE (Alu)	MEI1	Intron	2
CP068256.2:42 592 175	59	LTR (ERV1)	NDUFA6-DT	Intron	1
CP068256.2:43 299 732	314	SINE (Alu)	ARFGAP3	Intron	2
CP068256.2:43 654 158	327	SINE (Alu)	TTLL12	Intron	2
CP068256.2:44 411 840	1 147	LINE (L1)	PNPLA3	Intron	1
CP068257.2:12 279 102	188	Retroposon (SVA)	LOC110091776	Promoter	2
CP068257.2:13 911 959	387	LINE (L1)	LOC105369302	Intron	2
CP068257.2:15 595 054	1 308	LINE (L1)	LOC107985511	Intron	2
CP068257.2:19 777 205	347	LTR (ERVL)	NCAM2	Intron	2
CP068257.2:21 725 994	324	SINE (Alu)	D21S2088E	Intron	2
CP068257.2:25 235 329	330	SINE (Alu)	LOC105372760	Intron	2
CP068257.2:27 546 510	353	SINE (Alu)	LOC105372767	Intron	2
CP068257.2:27 595 748	333	SINE (Alu)	LINC00189	Intron	2
CP068257.2:34 874 715	322	SINE (Alu)	CLDN14-AS1	Intron	2
CP068257.2:36 014 613	323	SINE (Alu)	KCNJ6-AS1	Intron	2
CP068257.2:38 974 146	117	SINE (Alu)	DSCAM	Intron	2
CP068257.2:39 632 883	50	LTR (ERV1)	BACE2	Intron	2
CP068257.2:41 166 978	96	Retroposon (SVA)	LINC01668	Intron	2
CP068258.2:1 615 940	575	LTR (ERV1)	SIRPB1	Intron	2
CP068258.2:3 292 706	311	SINE (Alu)	DNAAF9	Intron	2
CP068258.2:9 684 360	118	LTR (ERV1)	PAK5	Intron	2
CP068258.2:15 176 135	291	SINE (Alu)	MACROD2	Intron	2
CP068258.2:16 549 972	324	LINE (L1)	KIF16B	Intron	2
CP068258.2:20 169 566	326	SINE (Alu)	CFAP61	Intron	2
CP068258.2:21 237 844	1 437	LINE (L1)	KIZ	Intron	2
CP068258.2:25 627 216	443	Retroposon (SVA)	NINL	Intron	2
CP068258.2:30 450 663	321	SINE (Alu)	FAM242A	Intron	2
CP068258.2:36 934 692	183	SINE (Alu)	PROCR	Intron	2
CP068258.2:37 082 086	301	SINE (Alu)	UQCC1	Intron	2
CP068258.2:37 591 607	323	SINE (Alu)	PHF20	Intron	2
CP068258.2:37 925 585	291	SINE (Alu)	EPB41L1	Intron	2
CP068258.2:38 114 785	94	SINE (Alu)	DLGAP4	Intron	2
CP068258.2:38 911 585	311	SINE (Alu)	RPN2	Intron	2
CP068258.2:50 455 768	193	SINE (Alu)	PREX1	Intron	2
CP068258.2:62 091 491	125	SINE (Alu)	MIR646HG	Intron	2
CP068258.2:63 187 710	320	SINE (Alu)	CDH4	Intron	2
CP068258.2:65 692 890	325	SINE (Alu)	TPD52L2	Intron	2
CP068259.2:2 535 989	124	SINE (Alu)	GNG7	Intron	2
CP068259.2:3 262 717	319	SINE (Alu)	CELF5	Intron	2
CP068259.2:5 844 818	69	LTR (ERV1)	FUT3	Promoter	2
CP068259.2:5 844 818	69	LTR (ERV1)	LOC101928844	Intron	2
CP068259.2:6 141 005	266	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 151 665	291	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 344 283	75	Retroposon (SVA)	ACER1	Intron	2
CP068259.2:6 913 159	323	SINE (Alu)	ADGRE1	Intron	2
CP068259.2:10 463 384	310	SINE (Alu)	ICAM3	Intron	2
CP068259.2:12 746 120	175	Retroposon (SVA)	ZNF791	Intron	2
CP068259.2:13 829 910	126	Retroposon (SVA)	LOC105372284	Intron	2
CP068259.2:16 013 804	117	LINE (L1)	CYP4F2	Intron	2
CP068259.2:17 856 398	164	SINE (Alu)	MAP1S	Intron	2
CP068259.2:18 265 771	319	SINE (Alu)	MAST3	Intron	2
CP068259.2:21 703 198	265	SINE (Alu)	LOC124904670	Intron	2
CP068259.2:21 715 981	319	SINE (Alu)	LOC101929007	Intron	2
CP068259.2:21 716 141	146	SINE (Alu)	LOC101929007	Intron	2
CP068259.2:21 722 228	301	SINE (Alu)	LOC101929007	Intron	1
CP068259.2:23 273 105	316	SINE (Alu)	ZNF730	Intron	2
CP068259.2:23 988 183	49	Retroposon (SVA)	RPSA2	Intron	2
CP068259.2:38 451 416	317	SINE (Alu)	TYROBP	Intron	2
CP068259.2:40 925 916	77	Retroposon (SVA)	SIPA1L3	Intron	2
CP068259.2:41 072 000	114	SINE (Alu)	SPINT2	Intron	2
CP068259.2:41 343 628	134	SINE (Alu)	RYR1	Intron	2
CP068259.2:47 849 106	92	SINE (Alu)	RELB	Intron	2
CP068259.2:54 049 533	135	SINE (Alu)	LOC105372442	Intron	2
CP068259.2:54 361 759	310	SINE (Alu)	LINC01872	Intron	2
CP068259.2:55 530 373	105	LINE (L1)	ZNF534	Intron	2
CP068259.2:55 665 437	135	SINE (Alu)	ZNF701	Intron	2
CP068259.2:55 896 337	126	Retroposon (SVA)	ZNF600	Intron	2
CP068259.2:56 195 815	316	SINE (Alu)	ZNF415	Intron	2
CP068259.2:59 549 110	316	SINE (Alu)	ZNF667	Intron	2
CP068259.2:59 694 584	318	SINE (Alu)	ZNF71	Intron	2
CP068259.2:61 203 202	329	SINE (Alu)	ZSCAN18	Intron	2
CP068259.2:61 501 633	175	Retroposon (SVA)	ZNF584	Intron	2
CP068259.2:646 264	72	SINE (Alu)	PRSS57	Intron	2
CP068259.2:773 676	311	SINE (Alu)	PLPPR3	Intron	2
CP068260.2:3 032 121	146	SINE (Alu)	EMILIN2	Intron	2
CP068260.2:8 797 339	112	SINE (Alu)	RAB12	Intron	2
CP068260.2:9 388 660	334	SINE (Alu)	ANKRD12	Intron	2
CP068260.2:11 073 229	315	SINE (Alu)	PIEZO2	Intron	2
CP068260.2:12 778 756	330	SINE (Alu)	SPIRE1	Intron	2
CP068260.2:22 171 533	321	SINE (Alu)	LINC01900	Intron	2
CP068260.2:27 152 079	318	SINE (Alu)	CHST9	Intron	2
CP068260.2:35 273 621	317	SINE (Alu)	MAPRE2	Intron	2
CP068260.2:45 956 220	80	SINE (Alu)	LOC105372093	Intron	2
CP068260.2:48 538 401	57	SINE (Alu)	LOC124904352	Intron	2
CP068260.2:52 608 255	324	SINE (Alu)	DCC	Intron	2
CP068260.2:53 663 279	322	SINE (Alu)	DCC	Intron	2
CP068260.2:55 681 933	318	SINE (Alu)	MIR4529	Promoter	2
CP068260.2:55 681 933	318	SINE (Alu)	TCF4-AS1	Intron	2
CP068260.2:56 003 038	317	SINE (Alu)	LOC105372130	Intron	2
CP068260.2:56 891 790	330	SINE (Alu)	WDR7	Intron	2
CP068260.2:57 914 128	143	SINE (Alu)	ATP8B1	Intron	2
CP068260.2:59 685 435	313	SINE (Alu)	CCBE1	Intron	2
CP068260.2:66 072 639	338	SINE (Alu)	CDH7	Intron	2
CP068260.2:70 644 924	312	SINE (Alu)	RPS2P6	Promoter	2
CP068260.2:70 644 924	312	SINE (Alu)	LOC124908034	Intron	2
CP068260.2:71 698 063	54	LINE (L1)	LOC107985179	Intron	2
CP068260.2:73 827 616	320	SINE (Alu)	LOC105372190	Intron	2
CP068260.2:77 079 849	311	SINE (Alu)	ZNF236	Promoter	2
CP068260.2:77 079 849	311	SINE (Alu)	ZNF236	Intron	2
CP068260.2:77 259 074	126	Retroposon (SVA)	MBP	Intron	2
CP068260.2:77 275 276	317	SINE (Alu)	MBP	Intron	2
CP068260.2:544 914	327	SINE (Alu)	LOC107985155	Intron	2
CP068261.2:2 178 843	134	SINE (Alu)	SMG6	Intron	2
CP068261.2:4 021 910	134	SINE (Alu)	ZZEF1	Intron	2
CP068261.2:5 409 832	324	SINE (Alu)	NLRP1	Intron	2
CP068261.2:6 338 036	119	LINE (L1)	LOC107985017	Intron	2
CP068261.2:9 176 006	134	SINE (Alu)	STX8	Intron	2
CP068261.2:10 082 999	317	SINE (Alu)	GAS7	Intron	2
CP068261.2:11 562 452	329	SINE (Alu)	DNAH9	Intron	2
CP068261.2:13 440 691	296	SINE (Alu)	HS3ST3A1	Intron	2
CP068261.2:13 709 042	285	SINE (Alu)	LOC100506974	Intron	2
CP068261.2:16 232 917	317	SINE (Alu)	PIGL	Intron	2
CP068261.2:16 533 126	1 318	Retroposon (SVA)	ZNF624	Intron	2
CP068261.2:18 021 722	309	SINE (Alu)	TUBB8P11	Intron	2
CP068261.2:18 680 625	315	SINE (Alu)	TRIM16L	Intron	2
CP068261.2:20 506 861	152	SINE (Alu)	LGALS9B	Intron	2
CP068261.2:31 681 321	760	Retroposon (SVA)	SUZ12P1	Intron	2
CP068261.2:32 278 209	349	LINE (L1)	NF1	Intron	2
CP068261.2:33 256 488	169	SINE (Alu)	RHBDL3	Intron	2
CP068261.2:33 264 228	185	SINE (Alu)	RHBDL3	Intron	2
CP068261.2:38 008 692	192	SINE (Alu)	AATF	Intron	2
CP068261.2:39 457 705	318	SINE (Alu)	SRCIN1	Intron	2
CP068261.2:41 050 467	310	SINE (Alu)	RAPGEFL1	Intron	2
CP068261.2:49 291 096	323	SINE (Alu)	SKAP1	Intron	2
CP068261.2:49 989 179	224	Retroposon (SVA)	B4GALNT2	Intron	2
CP068261.2:61 447 465	325	SINE (Alu)	LINC01999	Intron	2
CP068261.2:62 777 760	311	SINE (Alu)	INTS2	Intron	2
CP068261.2:69 968 391	311	SINE (Alu)	ABCA6	Intron	2
CP068261.2:73 573 179	318	SINE (Alu)	SLC39A11	Intron	2
CP068261.2:75 935 935	316	SINE (Alu)	KCTD2	Intron	2
CP068261.2:78 886 239	313	SINE (Alu)	TNRC6C	Intron	2
CP068261.2:79 403 508	181	SINE (Alu)	DNAH17	Intron	2
CP068261.2:82 055 352	326	SINE (Alu)	AATK	Intron	2
CP068261.2:82 527 912	321	SINE (Alu)	NPLOC4	Promoter	2
CP068261.2:82 527 912	321	SINE (Alu)	NPLOC4	Intron	2
CP068261.2:455 386	97	Retroposon (SVA)	VPS53	Intron	2
CP068262.2:4 788 797	329	SINE (Alu)	ZNF500	Intron	2
CP068262.2:5 324 682	319	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:6 773 894	1 436	LINE (L1)	RBFOX1	Intron	2
CP068262.2:6 869 242	326	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:7 207 291	324	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:11 372 328	118	Retroposon (SVA)	LOC105371082	Intron	2
CP068262.2:11 372 371	294	Retroposon (SVA)	LOC105371082	Intron	2
CP068262.2:15 116 749	85	SINE (Alu)	PDXDC1	Intron	2
CP068262.2:15 403 897	313	SINE (Alu)	MPV17L	Intron	2
CP068262.2:19 149 959	344	SINE (Alu)	SYT17	Intron	2
CP068262.2:19 426 191	323	SINE (Alu)	TMC5	Intron	2
CP068262.2:19 437 051	318	SINE (Alu)	GDE1	Intron	2
CP068262.2:22 425 396	311	SINE (Alu)	LOC105371126	Intron	2
CP068262.2:23 793 318	312	SINE (Alu)	GGA2	Intron	2
CP068262.2:24 129 334	324	SINE (Alu)	PRKCB	Intron	2
CP068262.2:63 015 018	318	SINE (Alu)	RSPRY1	Intron	2
CP068262.2:64 052 598	321	SINE (Alu)	CFAP263	Intron	2
CP068262.2:64 555 274	134	SINE (Alu)	LOC107984867	Intron	1
CP068262.2:64 559 334	56	SINE (Alu)	LOC107984867	Intron	2
CP068262.2:65 734 387	319	SINE (Alu)	LINC02141	Intron	2
CP068262.2:65 799 060	320	SINE (Alu)	LINC02141	Intron	2
CP068262.2:67 801 060	330	SINE (Alu)	CDH8	Intron	2
CP068262.2:75 622 947	53	SINE (Alu)	WWP2	Intron	2
CP068262.2:83 252 469	314	SINE (Alu)	MON1B	Intron	2
CP068262.2:83 862 431	134	SINE (Alu)	VAT1L	Intron	2
CP068262.2:84 715 226	323	SINE (Alu)	WWOX	Intron	2
CP068262.2:86 496 713	321	SINE (Alu)	DYNLRB2-AS1	Intron	2
CP068262.2:86 724 756	326	SINE (Alu)	CDYL2	Intron	2
CP068262.2:87 305 197	311	SINE (Alu)	BCO1	Intron	2
CP068262.2:88 943 271	321	SINE (Alu)	CDH13	Intron	2
CP068262.2:91 141 715	330	SINE (Alu)	KIAA0513	Intron	2
CP068262.2:94 530 929	334	SINE (Alu)	ZFPM1	Intron	2
CP068262.2:449 468	320	SINE (Alu)	RAB11FIP3	Intron	1
CP068262.2:480 325	310	SINE (Alu)	RAB11FIP3	Intron	2
CP068263.2:20 002 339	330	SINE (Alu)	LOC124907500	Intron	2
CP068263.2:20 256 381	135	SINE (Alu)	HERC2P2	Intron	2
CP068263.2:21 696 325	308	SINE (Alu)	LOC107984787	Intron	2
CP068263.2:33 461 719	125	Retroposon (SVA)	DPH6-DT	Intron	2
CP068263.2:33 609 416	309	SINE (Alu)	DPH6-DT	Intron	2
CP068263.2:38 436 995	709	LINE (L1)	KNL1	Intron	2
CP068263.2:38 614 143	315	SINE (Alu)	DNAJC17	Promoter	2
CP068263.2:38 614 143	315	SINE (Alu)	ZFYVE19	Intron	2
CP068263.2:39 531 742	328	SINE (Alu)	MGA	Intron	2
CP068263.2:43 641 520	325	SINE (Alu)	LOC105370802	Intron	2
CP068263.2:45 023 038	6 055	LINE (L1)	SEMA6D	Intron	2
CP068263.2:49 102 335	66	Retroposon (SVA)	CYP19A1	Intron	2
CP068263.2:51 705 824	345	SINE (Alu)	UNC13C	Intron	2
CP068263.2:52 318 050	314	SINE (Alu)	UNC13C	Intron	2
CP068263.2:53 913 580	183	Retroposon (SVA)	LOC124903498	Intron	1
CP068263.2:53 913 806	51	Retroposon (SVA)	LOC124903498	Intron	1
CP068263.2:55 792 313	106	SINE (Alu)	ALDH1A2	Intron	2
CP068263.2:56 106 612	320	SINE (Alu)	LOC124907518	Intron	2
CP068263.2:58 168 194	330	SINE (Alu)	ANXA2	Intron	2
CP068263.2:64 197 247	323	SINE (Alu)	TIPIN	Intron	2
CP068263.2:64 824 381	312	SINE (Alu)	SMAD3-DT	Intron	2
CP068263.2:65 174 494	318	SINE (Alu)	IQCH	Intron	2
CP068263.2:67 062 769	57	SINE (Alu)	GLCE	Intron	2
CP068263.2:69 587 991	175	Retroposon (SVA)	THSD4	Intron	2
CP068263.2:74 404 844	281	SINE (Alu)	SCAPER	Intron	2
CP068263.2:75 994 841	164	SINE (Alu)	CIB2	Promoter	2
CP068263.2:76 383 514	147	Retroposon (SVA)	HYKK	Intron	2
CP068263.2:76 507 733	318	SINE (Alu)	CHRNB4	Intron	2
CP068263.2:77 366 877	315	SINE (Alu)	LOC105370919	Promoter	2
CP068263.2:82 652 622	73	SINE (Alu)	SLC28A1	Intron	2
CP068263.2:83 196 621	334	SINE (Alu)	AKAP13	Intron	2
CP068263.2:83 433 722	325	SINE (Alu)	AKAP13	Intron	2
CP068263.2:90 530 518	99	Retroposon (SVA)	LOC101926994	Intron	1
CP068263.2:90 786 186	318	SINE (Alu)	CHD2	Intron	2
CP068263.2:93 349 076	291	SINE (Alu)	LOC105370995	Intron	2
CP068263.2:96 121 828	565	LINE (L1)	LINC02351	Intron	2
CP068263.2:248 491	313	SINE (Alu)	TUBB8P11	Intron	1
CP068264.2:14 215 583	352	SINE (Alu)	OR4K14	Intron	2
CP068264.2:14 703 671	126	Retroposon (SVA)	RNASE10	Intron	2
CP068264.2:14 703 880	73	Retroposon (SVA)	RNASE10	Intron	2
CP068264.2:17 906 483	330	SINE (Alu)	LOC105370409	Intron	2
CP068264.2:18 207 639	2 014	LINE (L1)	DHRS4L2	Intron	2
CP068264.2:18 410 930	166	SINE (Alu)	CHMP4A	Intron	2
CP068264.2:29 128 780	87	SINE (Alu)	SRP54-AS1	Intron	2
CP068264.2:29 131 238	312	SINE (Alu)	SRP54-AS1	Intron	2
CP068264.2:29 208 088	314	SINE (Alu)	SRP54	Intron	2
CP068264.2:34 604 158	331	SINE (Alu)	LOC105370465	Intron	2
CP068264.2:45 556 369	337	SINE (Alu)	LINC00640	Intron	2
CP068264.2:46 330 362	130	LTR (ERV1)	LINC02319	Intron	2
CP068264.2:49 534 324	320	SINE (Alu)	FBXO34	Intron	2
CP068264.2:67 389 826	85	Retroposon (SVA)	PSEN1	Intron	2
CP068264.2:67 743 055	1 418	LTR (ERV1)	ACOT1	Intron	1
CP068264.2:67 743 505	719	LTR (ERV1)	ACOT1	Intron	1
CP068264.2:67 754 433	185	SINE (Alu)	HEATR4	Intron	2
CP068264.2:67 764 611	309	SINE (Alu)	HEATR4	Intron	2
CP068264.2:69 938 554	1 012	LINE (L1)	TTLL5	Intron	2
CP068264.2:71 669 839	318	SINE (Alu)	AHSA1	Intron	2
CP068264.2:72 724 910	331	SINE (Alu)	NRXN3	Intron	2
CP068264.2:87 596 457	315	SINE (Alu)	UNC79	Intron	2
CP068264.2:94 611 756	326	SINE (Alu)	WDR25	Intron	2
CP068264.2:95 760 108	331	SINE (Alu)	LOC105370673	Intron	2
CP068264.2:101 041 873	367	LTR (ERVL)	LOC124907431	Promoter	2
CP068265.2:13 715 682	197	SINE (Alu)	FAM230C	Intron	2
CP068265.2:20 642 568	145	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:20 642 569	497	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:24 474 413	135	SINE (Alu)	MTMR6	Intron	2
CP068265.2:27 488 271	321	SINE (Alu)	PAN3	Intron	2
CP068265.2:28 214 233	66	LTR (ERV1)	MTUS2	Intron	2
CP068265.2:28 541 097	311	SINE (Alu)	MTUS2	Intron	2
CP068265.2:28 603 950	322	SINE (Alu)	MTUS2	Intron	2
CP068265.2:29 823 844	319	SINE (Alu)	HMGB1	Intron	2
CP068265.2:33 759 335	76	Retroposon (SVA)	LINC02343	Intron	2
CP068265.2:41 100 875	78	Retroposon (SVA)	VWA8	Intron	2
CP068265.2:41 372 209	324	SINE (Alu)	DGKH	Intron	2
CP068265.2:45 294 975	308	SINE (Alu)	CPB2-AS1	Intron	2
CP068265.2:45 366 990	318	SINE (Alu)	LCP1	Intron	2
CP068265.2:45 778 723	328	SINE (Alu)	LRCH1	Intron	2
CP068265.2:45 805 236	3 087	Retroposon (SVA)	LRCH1	Intron	2
CP068265.2:48 723 116	77	Retroposon (SVA)	SETDB2-PHF11	Intron	2
CP068265.2:59 110 423	326	SINE (Alu)	DIAPH3	Intron	2
CP068265.2:77 302 799	313	SINE (Alu)	OBI1-AS1	Intron	2
CP068265.2:84 144 201	231	SINE (Alu)	LOC105370290	Intron	2
CP068265.2:89 698 660	101	LTR (ERV1)	LINC01049	Intron	2
CP068265.2:91 376 118	319	SINE (Alu)	GPC5	Intron	2
CP068265.2:93 800 756	144	SINE (Alu)	TGDS	Promoter	2
CP068265.2:98 181 349	135	SINE (Alu)	DOCK9	Intron	2
CP068265.2:100 098 881	318	SINE (Alu)	NALCN-AS1	Intron	2
CP068265.2:107 842 850	61	LINE (L1)	MYO16	Intron	2
CP068265.2:109 388 985	315	SINE (Alu)	COL4A1	Intron	2
CP068265.2:109 862 682	128	LTR (ERV1)	NAXD	Intron	2
CP068265.2:111 926 533	80	Retroposon (SVA)	ATP11AUN	Intron	2
CP068265.2:112 115 809	313	SINE (Alu)	ATP11A	Intron	2
CP068265.2:113 324 614	325	SINE (Alu)	RASA3	Intron	2
CP068266.2:1 976 788	319	SINE (Alu)	CACNA1C	Intron	2
CP068266.2:2 835 906	262	SINE (Alu)	ITFG2	Intron	2
CP068266.2:3 101 640	128	Retroposon (SVA)	TSPAN9	Intron	2
CP068266.2:6 807 792	255	SINE (Alu)	CD4	Intron	2
CP068266.2:9 882 704	250	SINE (Alu)	CLEC12A	Intron	2
CP068266.2:10 960 223	334	SINE (Alu)	PRH1-PRR4	Intron	2
CP068266.2:10 975 580	304	SINE (Alu)	PRH1-PRR4	Intron	2
CP068266.2:12 283 007	97	Retroposon (SVA)	BORCS5	Intron	2
CP068266.2:12 654 312	1 782	LINE (L1)	APOLD1	Intron	2
CP068266.2:14 829 038	321	SINE (Alu)	ARHGDIB	Promoter	2
CP068266.2:14 829 038	321	SINE (Alu)	ARHGDIB	Intron	2
CP068266.2:18 474 599	288	SINE (Alu)	PIK3C2G	Intron	2
CP068266.2:20 199 299	320	SINE (Alu)	LOC105369688	Intron	2
CP068266.2:20 588 176	331	SINE (Alu)	SLCO1C1	Intron	2
CP068266.2:21 811 737	332	SINE (Alu)	ABCC9	Intron	2
CP068266.2:25 390 110	470	LINE (L1)	LMNTD1	Intron	2
CP068266.2:26 657 326	586	Retroposon (SVA)	ITPR2	Intron	2
CP068266.2:26 657 354	156	Retroposon (SVA)	ITPR2	Intron	1
CP068266.2:26 657 772	149	Retroposon (SVA)	ITPR2	Intron	1
CP068266.2:27 153 024	326	SINE (Alu)	STK38L	Intron	2
CP068266.2:27 583 597	315	SINE (Alu)	MRPS35	Intron	2
CP068266.2:27 945 242	6 061	LINE (L1)	LOC105369710	Intron	2
CP068266.2:28 158 038	315	SINE (Alu)	CCDC91	Intron	2
CP068266.2:29 535 979	185	SINE (Alu)	TMTC1	Intron	2
CP068266.2:29 543 253	312	SINE (Alu)	TMTC1	Intron	2
CP068266.2:32 686 985	313	SINE (Alu)	PKP2	Intron	2
CP068266.2:40 231 437	306	SINE (Alu)	LRRK2	Intron	2
CP068266.2:40 391 169	306	SINE (Alu)	MUC19	Intron	2
CP068266.2:41 225 229	310	SINE (Alu)	PDZRN4	Intron	2
CP068266.2:41 239 964	344	LINE (L1)	PDZRN4	Intron	2
CP068266.2:42 186 236	98	Retroposon (SVA)	YAF2	Intron	2
CP068266.2:42 369 287	73	LTR (ERVK)	PPHLN1	Intron	2
CP068266.2:44 984 370	310	SINE (Alu)	DBX2	Intron	2
CP068266.2:50 739 488	308	SINE (Alu)	ATF1	Intron	2
CP068266.2:53 648 538	315	SINE (Alu)	ATP5MC2	Promoter	2
CP068266.2:56 751 565	49	Retroposon (SVA)	HSD17B6	Intron	1
CP068266.2:59 085 415	340	SINE (Alu)	LRIG3-DT	Intron	2
CP068266.2:62 862 683	329	SINE (Alu)	LOC105369795	Intron	2
CP068266.2:64 182 842	85	LINE (L1)	KICS2	Intron	2
CP068266.2:64 720 062	175	SINE (Alu)	GNS	Intron	2
CP068266.2:66 597 283	332	SINE (Alu)	GRIP1	Intron	2
CP068266.2:67 934 329	325	SINE (Alu)	LINC01479	Intron	2
CP068266.2:77 981 522	329	SINE (Alu)	NAV3	Intron	2
CP068266.2:91 425 858	292	SINE (Alu)	LOC105369896	Intron	2
CP068266.2:94 256 702	320	SINE (Alu)	PLXNC1	Intron	2
CP068266.2:101 881 504	101	SINE (Alu)	DRAM1	Intron	2
CP068266.2:104 285 274	50	Retroposon (SVA)	TXNRD1	Intron	2
CP068266.2:104 884 820	187	SINE (Alu)	SLC41A2	Intron	2
CP068266.2:105 341 485	316	SINE (Alu)	LOC105369957	Intron	2
CP068266.2:121 878 118	191	SINE (Alu)	HPD	Intron	2
CP068266.2:121 990 164	462	Retroposon (SVA)	CFAP251	Intron	1
CP068266.2:122 704 280	49	Retroposon (SVA)	LOC124906985	Intron	1
CP068266.2:122 704 283	49	Retroposon (SVA)	LOC124906985	Intron	1
CP068266.2:124 855 294	309	SINE (Alu)	SCARB1	Intron	2
CP068266.2:126 414 081	326	SINE (Alu)	LINC02825	Intron	2
CP068266.2:126 429 324	327	SINE (Alu)	LINC02825	Intron	2
CP068266.2:126 723 341	319	SINE (Alu)	LINC02824	Intron	2
CP068266.2:127 028 600	224	SINE (Alu)	LOC105370063	Intron	2
CP068266.2:129 608 033	326	SINE (Alu)	TMEM132D	Intron	2
CP068266.2:130 642 135	141	SINE (Alu)	RIMBP2	Intron	2
CP068266.2:779 626	137	SINE (Alu)	WNK1	Intron	2
CP068267.2:2 838 941	124	SINE (Alu)	KCNQ1	Intron	2
CP068267.2:4 952 227	236	SINE (Alu)	MMP26	Intron	2
CP068267.2:5 010 999	301	SINE (Alu)	MMP26	Intron	2
CP068267.2:7 389 912	329	SINE (Alu)	SYT9	Intron	2
CP068267.2:7 466 057	327	SINE (Alu)	SYT9	Intron	2
CP068267.2:8 949 899	318	SINE (Alu)	DENND2B	Intron	2
CP068267.2:9 857 725	325	SINE (Alu)	SBF2-AS1	Intron	2
CP068267.2:9 948 771	330	SINE (Alu)	LOC101928008	Intron	2
CP068267.2:14 573 741	321	SINE (Alu)	COPB1	Intron	2
CP068267.2:16 096 396	322	SINE (Alu)	SOX6	Intron	2
CP068267.2:17 004 803	253	Retroposon (SVA)	PLEKHA7	Intron	2
CP068267.2:17 272 181	313	SINE (Alu)	PIK3C2A	Intron	2
CP068267.2:22 361 771	124	LINE (L1)	ANO5	Intron	2
CP068267.2:22 364 247	1 122	LINE (L1)	ANO5	Intron	2
CP068267.2:24 902 348	320	SINE (Alu)	LUZP2	Intron	2
CP068267.2:25 682 675	345	SINE (Alu)	LINC02699	Intron	2
CP068267.2:26 799 043	91	SINE (Alu)	ANO3	Intron	2
CP068267.2:27 262 274	6 058	LINE (L1)	BBOX1	Intron	2
CP068267.2:27 576 700	388	LINE (L1)	LGR4	Intron	2
CP068267.2:27 776 457	331	LTR (ERV1)	BDNF-AS	Intron	2
CP068267.2:31 266 980	316	SINE (Alu)	DCDC1	Intron	2
CP068267.2:32 548 205	310	SINE (Alu)	WT1	Intron	2
CP068267.2:34 364 862	324	SINE (Alu)	ABTB2	Intron	2
CP068267.2:42 181 175	330	SINE (Alu)	LINC02745	Intron	2
CP068267.2:47 253 984	175	Retroposon (SVA)	CSTPP1	Intron	2
CP068267.2:47 950 030	304	SINE (Alu)	NUP160	Intron	2
CP068267.2:49 811 499	302	SINE (Alu)	GRM5P1	Intron	2
CP068267.2:58 991 318	332	SINE (Alu)	LOC283194	Intron	2
CP068267.2:60 485 034	80	LINE (L1)	MS4A13	Intron	2
CP068267.2:62 482 327	319	SINE (Alu)	AHNAK	Intron	2
CP068267.2:63 882 702	259	LINE (L1)	MARK2	Intron	2
CP068267.2:66 210 945	320	SINE (Alu)	PACS1	Intron	2
CP068267.2:75 339 542	77	Retroposon (SVA)	RPS3	Intron	2
CP068267.2:77 212 145	313	SINE (Alu)	GDPD4	Intron	2
CP068267.2:78 718 193	329	SINE (Alu)	TENM4	Intron	2
CP068267.2:79 061 406	55	LTR (ERVL)	TENM4	Intron	2
CP068267.2:86 200 699	317	SINE (Alu)	EED	Intron	2
CP068267.2:89 394 639	332	SINE (Alu)	NOX4	Intron	2
CP068267.2:96 505 968	312	SINE (Alu)	JRKL-AS1	Intron	2
CP068267.2:99 867 915	328	SINE (Alu)	CNTN5	Intron	2
CP068267.2:100 757 844	67	LTR (ERV1)	ARHGAP42	Intron	2
CP068267.2:101 555 768	328	SINE (Alu)	TRPC6	Intron	2
CP068267.2:102 479 728	220	SINE (Alu)	LOC124902740	Intron	2
CP068267.2:104 689 622	1 466	LINE (L1)	LOC105369466	Intron	2
CP068267.2:104 919 973	323	SINE (Alu)	CASP4LP	Intron	2
CP068267.2:110 116 232	326	SINE (Alu)	ZC3H12C	Intron	2
CP068267.2:114 530 382	71	SINE (Alu)	NXPE2	Intron	2
CP068267.2:117 829 192	317	SINE (Alu)	DSCAML1	Intron	2
CP068267.2:118 468 710	321	SINE (Alu)	KMT2A	Intron	2
CP068267.2:118 715 549	133	SINE (Alu)	LOC105369519	Intron	2
CP068267.2:119 029 799	322	SINE (Alu)	CENATAC	Intron	2
CP068267.2:127 104 382	331	SINE (Alu)	LOC101929473	Intron	2
CP068267.2:130 127 238	452	Retroposon (SVA)	APLP2	Intron	2
CP068267.2:473 330	318	SINE (Alu)	ANO9	Intron	2
CP068268.2:3 530 702	315	SINE (Alu)	LOC105376360	Intron	2
CP068268.2:4 863 983	71	LINE (L1)	AKR1E2	Intron	2
CP068268.2:5 002 348	326	SINE (Alu)	AKR1C2	Intron	1
CP068268.2:9 275 804	198	Retroposon (SVA)	LOC101928272	Intron	2
CP068268.2:10 778 281	170	SINE (Alu)	CELF2	Intron	2
CP068268.2:14 722 869	64	LINE (L1)	FAM107B	Intron	2
CP068268.2:19 127 408	330	SINE (Alu)	MALRD1	Intron	2
CP068268.2:19 280 911	317	SINE (Alu)	MALRD1	Intron	2
CP068268.2:24 675 640	97	Retroposon (SVA)	ARHGAP21	Intron	2
CP068268.2:26 090 723	315	SINE (Alu)	MYO3A	Intron	2
CP068268.2:26 503 688	304	SINE (Alu)	APBB1IP	Intron	2
CP068268.2:29 454 890	569	LINE (L1)	SVIL-AS1	Intron	2
CP068268.2:29 760 714	173	SINE (Alu)	SVIL	Intron	2
CP068268.2:30 356 857	312	SINE (Alu)	MTPAP	Intron	2
CP068268.2:30 638 183	126	SINE (Alu)	LYZL2	Intron	2
CP068268.2:32 472 006	49	LINE (L1)	LOC101929431	Intron	2
CP068268.2:34 285 280	319	SINE (Alu)	PARD3	Intron	2
CP068268.2:44 303 375	168	Retroposon (SVA)	LINC02916	Intron	1
CP068268.2:49 919 156	315	SINE (Alu)	VSTM4	Intron	2
CP068268.2:50 012 404	337	SINE (Alu)	TMEM273	Intron	2
CP068268.2:52 241 562	49	Retroposon (SVA)	PRKG1	Intron	2
CP068268.2:52 951 752	275	SINE (Alu)	PRKG1	Intron	2
CP068268.2:55 230 323	330	SINE (Alu)	PCDH15	Intron	2
CP068268.2:55 607 393	314	SINE (Alu)	PCDH15	Intron	2
CP068268.2:62 840 679	170	SINE (Alu)	ARID5B	Intron	2
CP068268.2:70 106 724	315	SINE (Alu)	HKDC1	Intron	2
CP068268.2:71 715 465	320	SINE (Alu)	SGPL1	Intron	2
CP068268.2:72 303 748	327	SINE (Alu)	CDH23	Intron	2
CP068268.2:74 555 179	337	SINE (Alu)	BMS1P4-AGAP5	Intron	2
CP068268.2:85 102 012	314	SINE (Alu)	LRIT2	Intron	2
CP068268.2:86 896 319	311	SINE (Alu)	GRID1	Intron	2
CP068268.2:87 790 483	338	SINE (Alu)	BMPR1A	Intron	2
CP068268.2:88 939 111	330	SINE (Alu)	LOC105378414	Intron	2
CP068268.2:95 704 117	392	LINE (L1)	CYP2C19	Intron	2
CP068268.2:102 861 010	320	SINE (Alu)	ARMH3	Intron	2
CP068268.2:102 921 189	141	Retroposon (SVA)	ARMH3	Intron	2
CP068268.2:104 015 782	177	Retroposon (SVA)	NT5C2	Intron	1
CP068268.2:104 225 372	313	SINE (Alu)	PCGF6	Intron	2
CP068268.2:104 471 083	259	SINE (Alu)	LOC124902496	Promoter	2
CP068268.2:104 471 083	259	SINE (Alu)	NEURL1	Intron	2
CP068268.2:107 018 352	142	SINE (Alu)	LOC105378469	Intron	2
CP068268.2:111 134 870	311	SINE (Alu)	MXI1	Intron	2
CP068268.2:113 205 090	315	SINE (Alu)	GUCY2GP	Intron	2
CP068268.2:113 289 049	328	SINE (Alu)	ACSL5	Intron	2
CP068268.2:115 681 774	49	Retroposon (SVA)	ABLIM1	Intron	2
CP068268.2:116 140 819	320	SINE (Alu)	ATRNL1	Intron	2
CP068268.2:117 229 439	324	SINE (Alu)	CCDC172	Intron	2
CP068268.2:119 905 022	318	SINE (Alu)	LINC03036	Intron	2
CP068268.2:120 176 576	332	SINE (Alu)	GRK5	Intron	2
CP068268.2:121 742 443	63	LTR (ERV1)	WDR11-DT	Intron	2
CP068268.2:128 286 207	314	SINE (Alu)	DOCK1	Intron	2
CP068268.2:131 025 575	97	LINE (L1)	C10orf143	Intron	2
CP068269.2:1 717 408	72	SINE (Alu)	LOC105375951	Intron	2
CP068269.2:4 819 338	290	SINE (Alu)	RCL1	Intron	2
CP068269.2:6 295 535	714	LINE (L1)	LOC107987046	Intron	2
CP068269.2:9 145 491	321	SINE (Alu)	PTPRD	Intron	2
CP068269.2:10 470 782	315	SINE (Alu)	PTPRD	Intron	2
CP068269.2:18 597 553	6 097	LINE (L1)	ADAMTSL1	Intron	2
CP068269.2:22 072 341	76	SINE (Alu)	CDKN2B-AS1	Intron	1
CP068269.2:32 330 851	231	SINE (Alu)	LOC107987059	Intron	2
CP068269.2:32 710 373	75	Retroposon (SVA)	LOC105376017	Intron	2
CP068269.2:34 293 360	332	SINE (Alu)	KIF24	Intron	2
CP068269.2:35 038 163	63	LINE (L1)	LOC105376025	Intron	2
CP068269.2:76 857 935	69	LINE (L1)	LOC124906851	Intron	2
CP068269.2:81 331 129	317	SINE (Alu)	TJP2	Intron	2
CP068269.2:82 997 613	314	SINE (Alu)	TRPM3	Intron	2
CP068269.2:83 458 461	325	SINE (Alu)	TRPM3	Intron	2
CP068269.2:84 767 523	313	SINE (Alu)	TMC1	Intron	2
CP068269.2:84 951 633	334	SINE (Alu)	TMC1	Intron	2
CP068269.2:84 957 302	97	Retroposon (SVA)	TMC1	Intron	2
CP068269.2:85 078 955	347	SINE (Alu)	ALDH1A1	Intron	2
CP068269.2:88 222 509	407	Retroposon (SVA)	PCSK5	Intron	2
CP068269.2:88 463 149	132	SINE (MIR)	PCSK5	Intron	2
CP068269.2:88 992 783	326	SINE (Alu)	PRUNE2	Intron	2
CP068269.2:91 626 241	3 768	LINE (L1)	LOC124902328	Intron	2
CP068269.2:97 437 226	307	SINE (Alu)	LOC105376119	Intron	2
CP068269.2:101 049 287	63	LINE (L1)	LOC124902205	Intron	2
CP068269.2:102 597 254	306	SINE (Alu)	LINC01508	Intron	2
CP068269.2:104 686 550	320	SINE (Alu)	CENPP	Intron	2
CP068269.2:106 136 047	250	SINE (Alu)	LOC124902216	Intron	2
CP068269.2:106 794 432	314	SINE (Alu)	FBP1	Intron	2
CP068269.2:110 499 969	327	SINE (Alu)	GABBR2	Intron	2
CP068269.2:112 443 781	81	SINE (Alu)	INVS	Intron	2
CP068269.2:115 487 860	189	SINE (Alu)	LINC01492	Intron	2
CP068269.2:119 632 661	61	SINE (Alu)	LINC01509	Intron	2
CP068269.2:121 668 497	307	SINE (Alu)	PTPN3	Promoter	2
CP068269.2:121 668 497	307	SINE (Alu)	PTPN3	Intron	2
CP068269.2:124 278 134	326	SINE (Alu)	SUSD1	Intron	2
CP068269.2:124 311 520	315	SINE (Alu)	SUSD1	Intron	2
CP068269.2:124 685 972	226	Retroposon (SVA)	KIAA1958	Intron	1
CP068269.2:124 686 231	175	Retroposon (SVA)	KIAA1958	Intron	2
CP068269.2:127 358 271	292	SINE (Alu)	DELEC1	Intron	2
CP068269.2:141 137 397	138	SINE (Alu)	PHYHD1	Intron	2
CP068269.2:141 894 415	312	SINE (Alu)	PRRX2	Intron	2
CP068269.2:144 740 730	2 979	LINE (L1)	CFAP77	Intron	2
CP068269.2:146 110 857	226	Retroposon (SVA)	VAV2	Intron	2
CP068269.2:194 449	321	SINE (Alu)	LOC105375943	Promoter	2
CP068269.2:863 345	114	Retroposon (SVA)	DMRT1	Intron	2
CP068270.2:3 524 025	329	SINE (Alu)	CSMD1	Intron	2
CP068270.2:4 117 692	317	SINE (Alu)	CSMD1	Intron	2
CP068270.2:4 348 134	95	LINE (L1)	CSMD1	Intron	2
CP068270.2:5 725 123	607	LINE (L1)	LOC105377795	Intron	2
CP068270.2:6 485 699	317	SINE (Alu)	AGPAT5	Intron	2
CP068270.2:10 137 744	311	SINE (Alu)	TNKS	Intron	2
CP068270.2:10 681 512	322	SINE (Alu)	ERI1	Intron	2
CP068270.2:11 544 378	70	LTR (ERVK)	FAM85B	Intron	1
CP068270.2:12 907 672	328	SINE (Alu)	LOC729732	Intron	2
CP068270.2:13 365 524	315	SINE (Alu)	DLC1	Intron	2
CP068270.2:15 385 820	222	SINE (Alu)	SGCZ	Intron	2
CP068270.2:17 372 585	320	SINE (Alu)	MICU3	Intron	2
CP068270.2:17 675 688	331	SINE (Alu)	MTMR7	Intron	2
CP068270.2:19 025 704	332	SINE (Alu)	PSD3	Intron	2
CP068270.2:19 059 693	971	LTR (ERVK)	PSD3	Intron	2
CP068270.2:26 048 555	112	LINE (L1)	LOC107986933	Intron	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Promoter	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Intron	2
CP068270.2:31 665 091	335	SINE (Alu)	LOC101929492	Intron	2
CP068270.2:32 796 257	198	LINE (L1)	NRG1	Intron	2
CP068270.2:34 175 409	284	SINE (Alu)	LOC105379364	Intron	2
CP068270.2:39 283 681	314	SINE (Alu)	ADAM9	Intron	2
CP068270.2:42 456 695	311	SINE (Alu)	PLAT	Intron	2
CP068270.2:52 201 378	321	SINE (Alu)	PCMTD1	Intron	2
CP068270.2:54 436 680	313	SINE (Alu)	LYPLA1-TCEA1	Intron	2
CP068270.2:55 866 232	315	SINE (Alu)	XKR4	Intron	2
CP068270.2:60 716 533	316	SINE (Alu)	LOC105375864	Intron	2
CP068270.2:61 037 962	324	SINE (Alu)	RAB2A	Intron	2
CP068270.2:66 088 341	72	Retroposon (SVA)	MTFR1	Intron	2
CP068270.2:66 658 372	175	Retroposon (SVA)	LOC102724687	Intron	2
CP068270.2:70 055 900	116	LTR (ERV1)	SULF1	Intron	2
CP068270.2:73 310 604	6 052	LINE (L1)	KCNB2	Intron	2
CP068270.2:73 800 713	327	SINE (Alu)	LOC105375899	Promoter	2
CP068270.2:74 052 032	172	SINE (Alu)	STAU2	Intron	2
CP068270.2:74 150 241	330	SINE (Alu)	STAU2	Intron	2
CP068270.2:76 854 880	1 041	LINE (L1)	LINC01111	Intron	2
CP068270.2:80 270 047	319	SINE (Alu)	LOC101927040	Intron	2
CP068270.2:81 286 924	314	SINE (Alu)	ZNF704	Intron	2
CP068270.2:87 184 808	320	SINE (Alu)	PSKH2	Intron	2
CP068270.2:87 814 335	147	Retroposon (SVA)	CNGB3	Promoter	2
CP068270.2:87 814 335	147	Retroposon (SVA)	CNGB3	Intron	2
CP068270.2:91 499 130	109	LTR (ERVL)	LINC00534	Intron	2
CP068270.2:95 615 990	168	SINE (Alu)	VIRMA	Intron	2
CP068270.2:96 503 803	231	SINE (Alu)	CFAP418-AS1	Intron	2
CP068270.2:96 580 482	314	SINE (Alu)	CFAP418-AS1	Intron	2
CP068270.2:104 056 669	245	Retroposon (SVA)	MAILR	Intron	2
CP068270.2:106 786 176	326	SINE (Alu)	ZFPM2	Intron	2
CP068270.2:107 844 447	325	SINE (Alu)	OXR1	Intron	2
CP068270.2:110 217 896	322	SINE (Alu)	TRHR	Intron	2
CP068270.2:116 603 468	324	SINE (Alu)	TRPS1	Intron	2
CP068270.2:117 806 203	718	Retroposon (SVA)	EIF3H	Intron	2
CP068270.2:121 797 875	317	SINE (Alu)	SNTB1	Intron	2
CP068270.2:126 458 371	317	SINE (Alu)	NSMCE2	Intron	2
CP068270.2:126 461 170	353	SINE (Alu)	NSMCE2	Intron	2
CP068270.2:126 716 410	6 007	LINE (L1)	LINC02964	Intron	2
CP068270.2:132 282 389	311	SINE (Alu)	LOC105375760	Intron	2
CP068270.2:137 820 678	330	SINE (Alu)	LINC02055	Intron	2
CP068270.2:138 964 925	319	SINE (Alu)	LOC401478	Intron	2
CP068270.2:139 161 052	318	SINE (Alu)	LOC401478	Intron	2
CP068271.2:2 382 174	77	Retroposon (SVA)	SNX8	Intron	2
CP068271.2:2 674 652	107	SINE (Alu)	IQCE	Intron	2
CP068271.2:8 616 432	327	SINE (Alu)	NXPH1	Intron	2
CP068271.2:15 262 062	60	LTR (ERV1)	AGMO	Intron	2
CP068271.2:15 556 034	134	LTR (ERVL)	AGMO	Intron	2
CP068271.2:18 412 782	280	SINE (Alu)	HDAC9	Intron	2
CP068271.2:23 776 953	125	Retroposon (SVA)	CCDC126	Intron	2
CP068271.2:26 303 990	119	LINE (L1)	NFE2L3	Intron	2
CP068271.2:38 626 104	322	SINE (Alu)	AMPH	Intron	2
CP068271.2:38 630 323	333	SINE (Alu)	AMPH	Intron	2
CP068271.2:43 532 806	253	SINE (Alu)	HECW1	Intron	2
CP068271.2:48 018 075	322	SINE (Alu)	PKD1L1	Intron	2
CP068271.2:68 345 877	6 044	LINE (L1)	TYW1	Intron	2
CP068271.2:68 364 737	319	SINE (Alu)	TYW1	Intron	2
CP068271.2:79 769 073	328	SINE (Alu)	MAGI2	Intron	2
CP068271.2:82 045 199	332	SINE (Alu)	SEMA3C	Intron	2
CP068271.2:84 052 406	316	SINE (Alu)	PCLO	Intron	2
CP068271.2:85 626 331	317	SINE (Alu)	SEMA3A	Intron	2
CP068271.2:86 363 451	306	SINE (Alu)	SEMA3D	Intron	2
CP068271.2:91 220 124	315	SINE (Alu)	STEAP2-AS1	Intron	2
CP068271.2:91 992 921	206	Retroposon (SVA)	CDK14	Intron	2
CP068271.2:93 363 499	316	SINE (Alu)	CYP51A1	Intron	2
CP068271.2:96 385 566	326	SINE (Alu)	PPP1R9A	Intron	2
CP068271.2:98 667 750	315	SINE (Alu)	LOC105375416	Intron	2
CP068271.2:102 681 693	2 777	Retroposon (SVA)	COL26A1	Intron	2
CP068271.2:103 867 428	84	SINE (Alu)	POLR2J3-UPK3BL2	Intron	2
CP068271.2:104 162 973	323	SINE (Alu)	FAM185A	Intron	2
CP068271.2:105 937 900	50	SINE (Alu)	LHFPL3	Intron	2
CP068271.2:106 264 512	103	SINE (Alu)	LOC101927902	Intron	2
CP068271.2:106 569 812	324	SINE (Alu)	SRPK2	Intron	2
CP068271.2:112 163 030	97	LINE (L1)	IMMP2L	Intron	2
CP068271.2:115 628 405	310	SINE (Alu)	FOXP2	Intron	2
CP068271.2:119 758 768	317	SINE (Alu)	LOC105375471	Intron	2
CP068271.2:123 785 759	326	SINE (Alu)	CADPS2	Intron	2
CP068271.2:124 629	227	LINE (L1)	LOC105375112	Intron	2
CP068271.2:124 771 869	6 076	LINE (L1)	IQUB	Intron	2
CP068271.2:126 270 363	320	SINE (Alu)	POT1-AS1	Intron	2
CP068271.2:126 339 965	167	LTR (ERVL)	POT1-AS1	Intron	2
CP068271.2:129 073 083	320	SINE (Alu)	SND1	Intron	2
CP068271.2:130 955 874	318	SINE (Alu)	NRF1	Intron	2
CP068271.2:135 973 338	419	LINE (L1)	BPGM	Intron	2
CP068271.2:136 047 537	322	SINE (Alu)	LOC124901750	Intron	2
CP068271.2:136 812 007	329	SINE (Alu)	CNOT4	Intron	2
CP068271.2:138 459 439	302	SINE (Alu)	LOC349160	Intron	2
CP068271.2:141 676 137	222	Retroposon (SVA)	SLC37A3	Intron	2
CP068271.2:149 923 454	135	SINE (Alu)	CUL1	Intron	2
CP068271.2:151 116 815	318	SINE (Alu)	ACTR3C	Intron	2
CP068271.2:152 533 887	143	SINE (Alu)	NUB1	Intron	2
CP068271.2:156 495 059	305	SINE (Alu)	LOC105375592	Intron	2
CP068271.2:158 746 778	338	SINE (Alu)	PTPRN2	Intron	2
CP068272.2:2 841 255	305	SINE (Alu)	SERPINB6	Promoter	2
CP068272.2:7 310 938	81	LTR (ERV1)	LOC102724234	Intron	2
CP068272.2:9 939 215	313	SINE (Alu)	OFCC1	Intron	2
CP068272.2:10 902 109	134	SINE (Alu)	ELOVL2	Intron	2
CP068272.2:13 064 129	6 056	LINE (L1)	PHACTR1	Intron	2
CP068272.2:13 394 506	328	SINE (Alu)	RPS4XP7	Promoter	2
CP068272.2:15 288 747	48	Retroposon (SVA)	JARID2	Intron	1
CP068272.2:15 288 768	50	Retroposon (SVA)	JARID2	Intron	1
CP068272.2:17 288 249	320	SINE (Alu)	CAP2	Intron	2
CP068272.2:19 027 502	326	SINE (Alu)	LOC101928519	Intron	2
CP068272.2:20 041 064	314	SINE (Alu)	MBOAT1	Intron	2
CP068272.2:24 682 785	5 931	LINE (L1)	RIPOR2	Intron	2
CP068272.2:27 249 849	49	LTR (ERV1)	ZNF391	Intron	1
CP068272.2:28 879 239	101	SINE (Alu)	ZNF311	Intron	2
CP068272.2:29 603 853	2 300	Retroposon (SVA)	HLA-F	Intron	2
CP068272.2:29 841 615	316	SINE (Alu)	HCG9	Intron	2
CP068272.2:31 265 398	84	LINE (L1)	MICA	Intron	2
CP068272.2:36 183 676	101	LTR (ERV1)	ETV7	Intron	2
CP068272.2:38 355 201	136	LTR (ERVK)	BTBD9	Intron	2
CP068272.2:38 778 843	313	SINE (Alu)	DNAH8	Intron	2
CP068272.2:42 430 462	160	SINE (Alu)	UBR2	Intron	2
CP068272.2:42 896 868	323	SINE (Alu)	KLC4	Intron	2
CP068272.2:43 757 249	317	SINE (Alu)	LINC01512	Intron	2
CP068272.2:45 835 182	326	SINE (Alu)	CLIC5	Intron	2
CP068272.2:51 717 831	6 032	LINE (L1)	PKHD1	Intron	2
CP068272.2:53 584 806	285	SINE (Alu)	LOC124901334	Intron	2
CP068272.2:53 623 893	313	SINE (Alu)	LOC124901333	Intron	2
CP068272.2:54 692 012	140	SINE (Alu)	FAM83B	Intron	2
CP068272.2:56 735 173	2 588	Retroposon (SVA)	DST	Intron	2
CP068272.2:57 438 109	310	SINE (Alu)	PRIM2	Intron	2
CP068272.2:62 724 632	133	SINE (Alu)	KHDRBS2	Intron	2
CP068272.2:66 607 855	309	SINE (Alu)	EYS	Intron	2
CP068272.2:70 300 658	76	Retroposon (SVA)	ADGRB3	Intron	2
CP068272.2:74 889 500	315	SINE (Alu)	CD109	Intron	2
CP068272.2:75 334 018	1 147	LINE (L1)	LOC101928516	Intron	2
CP068272.2:75 805 446	326	SINE (Alu)	LOC101928516	Intron	2
CP068272.2:76 483 619	49	SINE (Alu)	FILIP1	Intron	2
CP068272.2:78 387 367	310	SINE (Alu)	LOC101928570	Intron	2
CP068272.2:78 831 815	303	SINE (Alu)	MEI4	Intron	2
CP068272.2:79 310 806	294	SINE (Alu)	LOC105377865	Intron	2
CP068272.2:84 185 928	313	SINE (Alu)	UBE3D	Intron	2
CP068272.2:91 739 448	320	SINE (Alu)	MAP3K7	Intron	2
CP068272.2:109 131 038	272	Retroposon (SVA)	SEC63	Intron	1
CP068272.2:111 652 259	308	SINE (Alu)	SLC22A16	Intron	2
CP068272.2:115 410 352	317	SINE (Alu)	HDAC2-AS2	Intron	2
CP068272.2:117 169 353	290	SINE (Alu)	FRK	Intron	2
CP068272.2:123 028 920	103	LINE (L2)	LOC105377979	Intron	2
CP068272.2:123 847 137	321	SINE (Alu)	PKIB	Intron	2
CP068272.2:125 365 522	320	SINE (Alu)	NKAIN2	Intron	2
CP068272.2:127 291 111	314	SINE (Alu)	TRMT11	Intron	2
CP068272.2:131 488 431	291	SINE (Alu)	SAMD3	Intron	2
CP068272.2:132 049 393	316	SINE (Alu)	EPB41L2	Intron	2
CP068272.2:132 292 270	943	LINE (L1)	LOC102723445	Intron	2
CP068272.2:133 194 329	320	SINE (Alu)	CCN2-AS1	Intron	2
CP068272.2:134 599 474	179	SINE (Alu)	EYA4	Intron	2
CP068272.2:137 339 890	71	SINE (Alu)	PDE7B	Intron	2
CP068272.2:140 470 041	316	SINE (Alu)	LOC102723690	Intron	2
CP068272.2:146 690 741	97	LINE (L1)	EPM2A	Intron	2
CP068272.2:149 677 325	283	SINE (Alu)	SASH1	Intron	2
CP068272.2:155 567 174	275	SINE (Alu)	LOC105378067	Promoter	2
CP068272.2:155 567 174	275	SINE (Alu)	LOC105378067	Intron	2
CP068272.2:156 319 028	328	SINE (Alu)	TIAM2	Intron	2
CP068272.2:157 199 315	305	SINE (Alu)	LOC101928923	Intron	2
CP068272.2:158 278 908	328	SINE (Alu)	ARID1B	Intron	2
CP068272.2:159 990 424	318	SINE (Alu)	SYTL3	Intron	2
CP068272.2:162 273 904	315	SINE (Alu)	LOC105378093	Intron	2
CP068272.2:167 234 415	332	SINE (Alu)	PDE10A	Intron	2
CP068272.2:169 930 528	325	SINE (Alu)	SMOC2	Intron	2
CP068273.2:1 857 117	309	SINE (Alu)	LOC124901165	Intron	2
CP068273.2:3 418 493	320	SINE (Alu)	LINC01019	Intron	2
CP068273.2:3 421 224	327	SINE (Alu)	LINC01019	Intron	2
CP068273.2:7 785 055	312	SINE (Alu)	CFAP90	Intron	2
CP068273.2:10 514 046	336	SINE (Alu)	ANKRD33B	Intron	2
CP068273.2:11 100 959	323	SINE (Alu)	CTNND2	Intron	2
CP068273.2:13 357 466	56	LINE (L1)	LOC105374660	Intron	2
CP068273.2:13 792 771	314	SINE (Alu)	DNAH5	Intron	2
CP068273.2:13 832 228	313	SINE (Alu)	DNAH5	Intron	2
CP068273.2:16 655 697	310	SINE (Alu)	MYO10	Intron	2
CP068273.2:21 346 640	313	SINE (Alu)	LOC102723561	Intron	2
CP068273.2:25 338 978	294	SINE (Alu)	LINC02211	Intron	2
CP068273.2:33 917 310	6 058	LINE (L1)	ADAMTS12	Intron	2
CP068273.2:34 235 086	320	SINE (Alu)	C1QTNF3-AMACR	Intron	2
CP068273.2:37 937 889	281	SINE (Alu)	WDR70	Intron	2
CP068273.2:39 542 380	335	SINE (Alu)	C9	Intron	2
CP068273.2:39 584 033	77	Retroposon (SVA)	C9	Intron	2
CP068273.2:56 700 127	328	SINE (Alu)	IL31RA	Intron	2
CP068273.2:63 380 905	324	SINE (Alu)	IPO11	Intron	2
CP068273.2:66 799 023	345	Retroposon (SVA)	ERBIN	Intron	2
CP068273.2:69 790 093	650	LINE (L1)	LOC107984116	Intron	2
CP068273.2:77 456 269	295	SINE (Alu)	CRHBP	Intron	2
CP068273.2:77 524 535	147	Retroposon (SVA)	AGGF1	Intron	2
CP068273.2:77 940 375	325	SINE (Alu)	WDR41	Intron	2
CP068273.2:78 760 229	285	SINE (Alu)	AP3B1	Intron	2
CP068273.2:79 463 339	318	SINE (Alu)	ARSB	Intron	2
CP068273.2:80 202 146	306	SINE (Alu)	CMYA5	Intron	2
CP068273.2:83 675 995	305	SINE (Alu)	XRCC4	Intron	2
CP068273.2:91 188 443	153	SINE (Alu)	ADGRV1	Intron	2
CP068273.2:97 075 093	338	SINE (Alu)	CAST	Intron	2
CP068273.2:109 785 655	167	LINE (L1)	LOC285638	Intron	2
CP068273.2:109 845 795	97	Retroposon (SVA)	PJA2	Intron	2
CP068273.2:111 960 940	186	SINE (Alu)	CAMK4	Intron	2
CP068273.2:118 013 084	305	SINE (Alu)	LINC00992	Intron	2
CP068273.2:120 200 303	334	SINE (Alu)	LOC348958	Promoter	2
CP068273.2:121 276 278	315	SINE (Alu)	PRR16	Intron	2
CP068273.2:123 455 521	320	SINE (Alu)	SNX24	Intron	2
CP068273.2:123 753 516	520	LINE (L1)	TUBB8P11	Intron	2
CP068273.2:137 581 809	234	LINE (L2)	SPOCK1	Intron	2
CP068273.2:138 669 937	65	LTR (ERV1)	BRD8	Intron	2
CP068273.2:139 924 858	295	SINE (Alu)	SPATA24	Intron	2
CP068273.2:147 526 118	317	SINE (Alu)	PPP2R2B	Intron	2
CP068273.2:156 396 451	314	SINE (Alu)	SGCD	Intron	2
CP068273.2:156 439 730	2 494	LINE (L1)	SGCD	Intron	2
CP068273.2:157 658 658	333	SINE (Alu)	MED7	Intron	2
CP068273.2:158 900 045	254	SINE (Alu)	LINC02227	Intron	2
CP068273.2:165 474 495	309	SINE (Alu)	LINC03000	Intron	2
CP068273.2:168 283 846	321	SINE (Alu)	TENM2	Intron	2
CP068273.2:171 270 546	85	SINE (Alu)	KCNIP1	Intron	2
CP068273.2:173 656 926	118	LINE (L1)	CREBRF	Intron	1
CP068273.2:177 568 572	330	SINE (Alu)	ZNF346	Intron	2
CP068273.2:178 279 547	169	SINE (Alu)	FAM153A	Intron	2
CP068273.2:180 497 165	147	SINE (Alu)	RNF130	Intron	2
CP068273.2:180 746 045	174	SINE (Alu)	RASGEF1C	Intron	2
CP068273.2:181 478 951	321	SINE (Alu)	BTNL8	Intron	2
CP068274.2:1 306 582	318	SINE (Alu)	MAEA	Intron	2
CP068274.2:2 568 818	317	SINE (Alu)	FAM193A	Intron	2
CP068274.2:4 004 477	80	LTR (ERV1)	LOC105374359	Intron	2
CP068274.2:4 038 891	319	SINE (Alu)	LOC101928217	Intron	2
CP068274.2:8 373 198	159	SINE (Alu)	ACOX3	Intron	2
CP068274.2:9 950 436	248	SINE (Alu)	SLC2A9	Intron	2
CP068274.2:9 954 701	316	SINE (Alu)	SLC2A9	Intron	2
CP068274.2:14 937 064	114	LTR (ERVL)	CPEB2-DT	Intron	2
CP068274.2:15 773 375	496	Retroposon (SVA)	CD38	Intron	2
CP068274.2:16 374 994	121	Retroposon (SVA)	LOC105374505	Intron	2
CP068274.2:18 990 978	326	SINE (Alu)	LOC107986263	Intron	2
CP068274.2:19 347 230	324	SINE (Alu)	LINC02438	Intron	2
CP068274.2:36 292 569	314	SINE (Alu)	DTHD1	Intron	2
CP068274.2:38 999 418	281	SINE (Alu)	TMEM156	Intron	2
CP068274.2:39 378 562	322	SINE (Alu)	KLB	Intron	2
CP068274.2:39 675 502	162	SINE (Alu)	UBE2K	Intron	2
CP068274.2:40 853 100	322	SINE (Alu)	APBB2	Intron	2
CP068274.2:41 023 194	133	Retroposon (SVA)	APBB2	Intron	2
CP068274.2:57 036 762	320	SINE (Alu)	LNX1	Intron	2
CP068274.2:58 993 922	318	SINE (Alu)	CLOCK	Intron	2
CP068274.2:59 545 992	196	SINE (Alu)	CRACD	Intron	2
CP068274.2:67 788 030	290	SINE (Alu)	TECRL	Intron	2
CP068274.2:71 614 671	317	SINE (Alu)	TMPRSS11F	Intron	2
CP068274.2:72 690 165	267	LINE (L1)	TUBB8P11	Intron	2
CP068274.2:72 946 089	310	SINE (Alu)	UGT2A2	Intron	2
CP068274.2:73 581 961	183	LINE (L1)	CSN3	Promoter	2
CP068274.2:73 581 961	183	LINE (L1)	CSN3	Intron	2
CP068274.2:75 446 974	318	SINE (Alu)	NPFFR2	Intron	2
CP068274.2:79 413 317	316	SINE (Alu)	ART3	Intron	2
CP068274.2:79 837 493	2 059	Retroposon (SVA)	SHROOM3	Intron	2
CP068274.2:81 736 931	325	SINE (Alu)	FRAS1	Intron	2
CP068274.2:82 894 257	83	LTR (ERV1)	LINC00989	Intron	2
CP068274.2:83 041 340	58	LINE (L1)	LOC105377302	Intron	2
CP068274.2:83 303 273	6 049	LINE (L1)	ANTXR2	Intron	1
CP068274.2:85 588 188	304	SINE (Alu)	LOC105377308	Intron	2
CP068274.2:88 878 813	314	SINE (Alu)	ARHGAP24	Intron	2
CP068274.2:89 350 681	160	LTR (ERV1)	MAPK10	Intron	2
CP068274.2:92 091 986	319	SINE (Alu)	FAM13A	Intron	2
CP068274.2:92 373 428	214	SINE (Alu)	FAM13A	Intron	2
CP068274.2:93 980 211	60	LTR (ERVL)	CCSER1	Intron	2
CP068274.2:95 798 087	319	SINE (Alu)	GRID2	Intron	2
CP068274.2:97 807 621	324	SINE (Alu)	PDLIM5	Intron	2
CP068274.2:98 264 406	318	SINE (Alu)	BMPR1B	Intron	2
CP068274.2:99 966 112	319	SINE (Alu)	LINC02267	Intron	2
CP068274.2:104 434 814	322	SINE (Alu)	PPP3CA	Intron	2
CP068274.2:105 736 347	1 888	LINE (L1)	LOC105377621	Intron	2
CP068274.2:106 266 328	2 512	LINE (L1)	SLC9B1	Intron	2
CP068274.2:120 081 692	904	LINE (L1)	LOC107986306	Intron	2
CP068274.2:127 013 551	129	LINE (L1)	LINC01091	Intron	2
CP068274.2:131 590 178	326	SINE (Alu)	PGRMC2	Intron	2
CP068274.2:143 337 477	151	SINE (Alu)	MAML3	Intron	2
CP068274.2:149 009 736	327	Retroposon (SVA)	C4orf51	Intron	1
CP068274.2:149 208 720	318	SINE (Alu)	ZNF827	Promoter	2
CP068274.2:149 208 720	318	SINE (Alu)	ZNF827	Intron	2
CP068274.2:152 561 795	340	SINE (Alu)	LINC02355	Intron	2
CP068274.2:153 696 602	318	SINE (Alu)	LRBA	Intron	2
CP068274.2:153 984 112	98	Retroposon (SVA)	LRBA	Intron	2
CP068274.2:154 538 668	126	Retroposon (SVA)	SH3D19	Intron	2
CP068274.2:157 304 320	322	SINE (Alu)	LOC101927947	Intron	2
CP068274.2:158 831 227	97	SINE (Alu)	LOC105377505	Intron	2
CP068274.2:166 928 648	314	SINE (Alu)	MARCHF1	Intron	2
CP068274.2:167 658 247	364	LINE (L1)	MARCHF1	Intron	2
CP068274.2:168 615 609	326	SINE (Alu)	KLHL2	Intron	2
CP068274.2:173 273 624	300	SINE (Alu)	LOC105377530	Intron	2
CP068274.2:176 567 723	316	SINE (Alu)	GALNT7	Intron	2
CP068274.2:177 952 805	327	SINE (Alu)	LOC105377549	Promoter	2
CP068274.2:177 952 805	327	SINE (Alu)	LOC105377549	Intron	2
CP068274.2:180 931 723	327	SINE (Alu)	AGA-DT	Intron	2
CP068274.2:183 743 146	134	SINE (Alu)	LOC105377567	Intron	2
CP068274.2:183 970 626	314	SINE (Alu)	LOC105377567	Intron	2
CP068274.2:184 287 159	177	Retroposon (SVA)	LOC105377567	Intron	2
CP068274.2:188 770 995	325	SINE (Alu)	CFAP96	Intron	2
CP068274.2:189 838 124	54	SINE (Alu)	F11-AS1	Intron	2
CP068274.2:191 339 483	115	Retroposon (SVA)	LOC124900881	Intron	2
CP068275.2:1 238 775	63	LTR (ERV1)	CNTN6	Intron	2
CP068275.2:2 123 290	333	SINE (Alu)	CNTN4	Intron	2
CP068275.2:2 584 962	312	SINE (Alu)	CNTN4	Intron	2
CP068275.2:2 766 318	327	SINE (Alu)	CNTN4	Intron	2
CP068275.2:7 082 643	330	SINE (Alu)	GRM7	Intron	2
CP068275.2:7 119 340	309	SINE (Alu)	GRM7	Intron	2
CP068275.2:11 482 481	294	Retroposon (SVA)	ATG7	Intron	2
CP068275.2:12 308 634	309	SINE (Alu)	PPARG	Intron	2
CP068275.2:17 692 738	322	SINE (Alu)	TBC1D5	Intron	2
CP068275.2:17 706 749	147	Retroposon (SVA)	TBC1D5	Intron	2
CP068275.2:25 239 836	323	SINE (Alu)	RARB	Intron	2
CP068275.2:25 252 730	71	LINE (L1)	RARB	Intron	2
CP068275.2:28 128 297	325	SINE (Alu)	LOC105377008	Intron	2
CP068275.2:29 475 804	159	LTR (ERV1)	RBMS3	Intron	2
CP068275.2:29 581 534	322	SINE (Alu)	RBMS3	Intron	2
CP068275.2:32 005 645	94	LTR (ERV1)	OSBPL10	Intron	2
CP068275.2:32 394 273	251	SINE (Alu)	CMTM7	Intron	2
CP068275.2:33 513 430	882	LINE (L1)	CLASP2	Intron	2
CP068275.2:35 305 680	324	SINE (Alu)	LOC101928135	Intron	2
CP068275.2:36 454 965	138	LTR (ERV1)	STAC	Intron	2
CP068275.2:37 564 342	320	SINE (Alu)	ITGA9	Intron	2
CP068275.2:37 883 215	341	SINE (Alu)	CTDSPL	Intron	2
CP068275.2:38 085 680	299	Retroposon (SVA)	DLEC1	Intron	2
CP068275.2:38 119 250	134	SINE (Alu)	DLEC1	Intron	2
CP068275.2:41 321 655	61	Retroposon (SVA)	ULK4	Intron	2
CP068275.2:45 150 159	318	SINE (Alu)	CDCP1	Intron	2
CP068275.2:45 517 532	317	SINE (Alu)	LARS2	Intron	2
CP068275.2:45 666 947	329	SINE (Alu)	LIMD1	Intron	2
CP068275.2:46 636 445	321	SINE (Alu)	FAM240A	Intron	2
CP068275.2:47 760 449	318	SINE (Alu)	SMARCC1	Intron	2
CP068275.2:48 737 575	324	SINE (Alu)	IP6K2	Intron	2
CP068275.2:50 054 724	268	SINE (Alu)	RBM6	Intron	2
CP068275.2:50 341 806	97	Retroposon (SVA)	HYAL1	Intron	2
CP068275.2:50 871 694	344	SINE (Alu)	DOCK3	Intron	2
CP068275.2:51 280 097	126	Retroposon (SVA)	DOCK3	Intron	2
CP068275.2:57 489 207	486	LTR (ERV1)	DNAH12	Intron	2
CP068275.2:57 618 834	310	SINE (Alu)	PDE12	Intron	2
CP068275.2:59 950 161	108	SINE (Alu)	FHIT	Intron	2
CP068275.2:61 714 843	178	Retroposon (SVA)	PTPRG	Intron	2
CP068275.2:61 714 843	280	Retroposon (SVA)	PTPRG	Intron	2
CP068275.2:63 598 884	312	SINE (Alu)	SYNPR	Intron	2
CP068275.2:66 758 044	136	SINE (Alu)	LOC105377142	Intron	2
CP068275.2:70 402 714	331	SINE (Alu)	SAMMSON	Intron	2
CP068275.2:71 229 921	299	SINE (Alu)	FOXP1	Intron	2
CP068275.2:79 818 450	330	SINE (Alu)	ROBO1	Intron	2
CP068275.2:80 595 596	6 100	LINE (L1)	LOC105377177	Intron	2
CP068275.2:82 376 966	107	LTR (ERV1)	LINC02008	Intron	2
CP068275.2:103 397 456	327	SINE (Alu)	ADGRG7	Intron	2
CP068275.2:104 176 252	323	SINE (Alu)	SENP7	Intron	2
CP068275.2:104 197 720	134	SINE (Alu)	SENP7	Intron	2
CP068275.2:110 007 621	315	SINE (Alu)	DUBR	Intron	2
CP068275.2:114 228 328	335	SINE (Alu)	LOC105374039	Intron	2
CP068275.2:114 926 706	49	LINE (L1)	SLC9C1	Intron	2
CP068275.2:118 384 394	329	SINE (Alu)	GAP43	Intron	2
CP068275.2:121 745 142	319	SINE (Alu)	IGSF11	Intron	2
CP068275.2:124 569 921	314	SINE (Alu)	EAF2	Intron	2
CP068275.2:125 800 969	326	SINE (Alu)	PDIA5	Intron	2
CP068275.2:127 093 813	499	Retroposon (SVA)	KALRN	Intron	2
CP068275.2:127 413 483	316	SINE (Alu)	KALRN	Intron	2
CP068275.2:128 503 270	308	SINE (Alu)	TUBB8P11	Intron	2
CP068275.2:129 372 854	325	SINE (Alu)	TXNRD3	Intron	2
CP068275.2:132 210 422	310	SINE (Alu)	IFT122	Intron	2
CP068275.2:145 488 419	314	SINE (Alu)	TRPC1	Intron	2
CP068275.2:145 833 710	401	Retroposon (SVA)	LOC105374138	Intron	2
CP068275.2:148 980 021	50	LTR (ERV1)	PLSCR4	Intron	2
CP068275.2:151 234 711	261	LINE (L1)	LOC105374150	Intron	2
CP068275.2:152 131 585	98	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:152 131 588	850	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:152 131 779	254	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:158 441 944	179	SINE (Alu)	PLCH1	Intron	2
CP068275.2:160 210 863	323	SINE (Alu)	PTX3	Promoter	2
CP068275.2:160 210 863	323	SINE (Alu)	VEPH1	Intron	2
CP068275.2:161 020 241	339	SINE (Alu)	RSRC1	Intron	2
CP068275.2:163 320 669	161	SINE (Alu)	KPNA4	Intron	2
CP068275.2:171 265 169	319	SINE (Alu)	EGFEM1P	Intron	2
CP068275.2:174 692 725	313	SINE (Alu)	LOC105374218	Intron	2
CP068275.2:175 390 208	142	SINE (Alu)	SLC31A1P1	Promoter	2
CP068275.2:175 468 147	318	SINE (Alu)	NCEH1	Intron	2
CP068275.2:177 480 228	322	SINE (Alu)	NAALADL2	Intron	2
CP068275.2:181 925 312	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
CP068275.2:190 057 581	329	SINE (Alu)	MASP1	Intron	2
CP068275.2:200 460 370	71	SINE (Alu)	RUBCN	Intron	2
CP068276.2:1 142 774	282	SINE (Alu)	SNTG2	Intron	2
CP068276.2:1 468 423	331	SINE (Alu)	TPO	Intron	2
CP068276.2:10 715 943	158	LINE (L2)	NOL10	Intron	2
CP068276.2:15 643 219	126	Retroposon (SVA)	DDX1	Intron	2
CP068276.2:25 039 473	315	SINE (Alu)	DNAJC27-AS1	Intron	2
CP068276.2:27 874 359	323	SINE (Alu)	RBKS	Intron	2
CP068276.2:28 174 642	325	SINE (Alu)	BABAM2	Intron	2
CP068276.2:32 189 307	322	SINE (Alu)	SPAST	Intron	2
CP068276.2:34 078 377	317	SINE (Alu)	LINC01317	Intron	2
CP068276.2:40 395 538	329	SINE (Alu)	SLC8A1	Intron	2
CP068276.2:44 594 088	225	Retroposon (SVA)	CAMKMT	Intron	1
CP068276.2:44 604 010	317	SINE (Alu)	CAMKMT	Intron	2
CP068276.2:47 587 887	2 883	Retroposon (SVA)	MSH2	Intron	2
CP068276.2:47 961 973	134	SINE (Alu)	LOC105374591	Intron	2
CP068276.2:48 560 596	2 686	Retroposon (SVA)	STON1-GTF2A1L	Intron	2
CP068276.2:50 018 018	133	SINE (Alu)	NRXN1	Intron	2
CP068276.2:51 765 172	311	SINE (Alu)	NRXN1-DT	Intron	2
CP068276.2:53 161 221	64	LINE (L1)	LOC105369165	Intron	2
CP068276.2:54 460 543	253	SINE (Alu)	SPTBN1	Promoter	2
CP068276.2:54 460 543	253	SINE (Alu)	SPTBN1	Intron	2
CP068276.2:56 143 345	319	SINE (Alu)	LOC105374690	Intron	2
CP068276.2:56 642 726	165	SINE (Alu)	LOC101927213	Intron	2
CP068276.2:62 280 995	317	SINE (Alu)	LOC105374761	Intron	2
CP068276.2:63 716 688	81	SINE (Alu)	WDPCP	Intron	2
CP068276.2:65 116 309	306	SINE (Alu)	RAB1A	Intron	2
CP068276.2:69 529 836	325	SINE (Alu)	AAK1	Intron	2
CP068276.2:74 070 032	351	Retroposon (SVA)	TET3	Intron	2
CP068276.2:74 292 982	328	SINE (Alu)	SLC4A5	Intron	2
CP068276.2:80 542 014	270	SINE (Alu)	CTNNA2	Intron	2
CP068276.2:81 704 371	312	SINE (Alu)	LOC102724542	Intron	2
CP068276.2:81 714 488	335	SINE (Alu)	LOC102724542	Intron	2
CP068276.2:88 741 786	3 045	LINE (L1)	RPIA	Intron	2
CP068276.2:98 423 896	304	SINE (Alu)	TMEM131	Intron	2
CP068276.2:102 198 725	316	SINE (Alu)	MAP4K4	Intron	2
CP068276.2:103 165 040	333	SINE (Alu)	SLC9A2	Intron	2
CP068276.2:107 771 785	321	SINE (Alu)	LINC01789	Intron	2
CP068276.2:112 385 913	326	SINE (Alu)	MERTK	Intron	2
CP068276.2:128 316 576	322	SINE (Alu)	AMMECR1L	Intron	2
CP068276.2:131 521 066	319	SINE (Alu)	FAM168B	Intron	2
CP068276.2:133 554 578	318	SINE (Alu)	NCKAP5	Intron	2
CP068276.2:141 752 388	57	LINE (L1)	LRP1B	Intron	2
CP068276.2:141 802 818	332	SINE (Alu)	LRP1B	Intron	2
CP068276.2:148 342 955	298	SINE (Alu)	ACVR2A	Intron	2
CP068276.2:150 220 893	319	SINE (Alu)	MMADHC-DT	Intron	2
CP068276.2:153 756 655	321	SINE (Alu)	GALNT13	Intron	2
CP068276.2:156 904 306	49	Retroposon (SVA)	GPD2	Intron	2
CP068276.2:158 030 254	326	SINE (Alu)	ACVR1C	Intron	2
CP068276.2:159 710 998	156	SINE (Alu)	WDSUB1	Intron	2
CP068276.2:160 457 569	319	SINE (Alu)	PLA2R1	Intron	2
CP068276.2:163 278 969	310	SINE (Alu)	KCNH7	Intron	2
CP068276.2:169 207 167	75	SINE (Alu)	CERS6	Intron	2
CP068276.2:169 505 778	318	SINE (Alu)	ABCB11	Intron	2
CP068276.2:174 714 647	320	SINE (Alu)	OLA1	Intron	2
CP068276.2:175 359 957	318	SINE (Alu)	CHN1	Intron	2
CP068276.2:177 936 293	332	SINE (Alu)	AGPS	Intron	2
CP068276.2:177 969 024	339	SINE (Alu)	AGPS	Intron	2
CP068276.2:181 505 642	310	SINE (Alu)	UBE2E3	Intron	2
CP068276.2:181 887 945	307	SINE (Alu)	LINC01934	Intron	2
CP068276.2:182 940 161	312	SINE (Alu)	PDE1A	Intron	2
CP068276.2:187 840 213	316	SINE (Alu)	CALCRL-AS1	Intron	2
CP068276.2:188 787 065	297	SINE (Alu)	GULP1	Intron	2
CP068276.2:191 887 362	478	Retroposon (SVA)	MYO1B	Intron	2
CP068276.2:196 356 056	274	SINE (Alu)	DNAH7	Intron	2
CP068276.2:198 513 690	136	SINE (Alu)	PLCL1	Intron	2
CP068276.2:201 256 725	968	LINE (L1)	AOX3P-AOX2P	Intron	2
CP068276.2:201 765 374	3 154	Retroposon (SVA)	CASP8	Intron	2
CP068276.2:202 258 175	325	SINE (Alu)	ALS2	Intron	2
CP068276.2:207 594 378	322	SINE (Alu)	KLF7	Intron	2
CP068276.2:208 081 694	315	SINE (Alu)	METTL21A	Intron	2
CP068276.2:209 066 826	324	SINE (Alu)	LOC101927960	Intron	2
CP068276.2:213 593 201	342	SINE (Alu)	IKZF2	Intron	2
CP068276.2:214 127 683	244	SINE (Alu)	SPAG16	Intron	2
CP068276.2:214 395 182	306	SINE (Alu)	SPAG16	Intron	2
CP068276.2:215 319 684	77	Retroposon (SVA)	SNHG31	Intron	2
CP068276.2:215 369 783	158	SINE (Alu)	SNHG31	Intron	2
CP068276.2:216 169 155	326	SINE (Alu)	LOC102724861	Intron	2
CP068276.2:216 174 633	133	SINE (Alu)	LOC102724861	Intron	1
CP068276.2:217 798 533	319	SINE (Alu)	DIRC3-AS1	Intron	2
CP068276.2:219 198 425	326	SINE (Alu)	TTLL4	Intron	2
CP068276.2:224 009 725	146	SINE (Alu)	LOC105373907	Intron	2
CP068276.2:226 634 805	245	SINE (Alu)	LOC646736	Intron	2
CP068276.2:233 687 447	149	SINE (Alu)	INPP5D	Intron	2
CP068276.2:234 212 774	50	Retroposon (SVA)	UGT1A8	Intron	2
CP068277.2:1 320 292	328	SINE (Alu)	GNB1	Intron	2
CP068277.2:6 326 450	177	SINE (Alu)	CAMTA1	Promoter	2
CP068277.2:6 326 450	177	SINE (Alu)	CAMTA1	Intron	2
CP068277.2:7 334 478	181	SINE (Alu)	PER3	Intron	2
CP068277.2:7 919 417	313	SINE (Alu)	RERE	Intron	2
CP068277.2:14 607 684	135	SINE (Alu)	TMEM51	Intron	2
CP068277.2:17 172 541	322	SINE (Alu)	PADI4	Intron	2
CP068277.2:20 992 773	316	SINE (Alu)	EIF4G3	Intron	2
CP068277.2:26 742 097	320	SINE (Alu)	NUDC	Intron	2
CP068277.2:28 942 968	322	SINE (Alu)	EPB41	Intron	2
CP068277.2:37 704 316	337	SINE (Alu)	MTF1	Intron	2
CP068277.2:38 352 287	74	SINE (Alu)	LOC105378657	Intron	2
CP068277.2:43 651 450	2 612	Retroposon (SVA)	ST3GAL3	Intron	2
CP068277.2:45 201 578	326	SINE (Alu)	MUTYH	Intron	2
CP068277.2:46 090 577	335	SINE (Alu)	LURAP1	Intron	2
CP068277.2:50 326 587	333	SINE (Alu)	FAF1	Intron	2
CP068277.2:56 248 453	3 850	LINE (L1)	LOC124905710	Intron	2
CP068277.2:56 301 172	313	SINE (Alu)	LOC124905710	Intron	2
CP068277.2:57 484 949	211	SINE (Alu)	DAB1	Intron	2
CP068277.2:59 284 566	319	SINE (Alu)	FGGY	Intron	2
CP068277.2:61 803 773	316	SINE (Alu)	PATJ	Intron	2
CP068277.2:64 759 246	333	SINE (Alu)	JAK1	Intron	2
CP068277.2:65 321 913	268	LINE (L1)	LEPR	Intron	2
CP068277.2:65 467 967	315	SINE (Alu)	LEPR	Intron	2
CP068277.2:66 613 403	328	SINE (Alu)	SGIP1	Intron	2
CP068277.2:69 355 344	307	SINE (Alu)	LOC105378789	Intron	2
CP068277.2:69 502 005	149	LINE (L1)	LRRC7	Intron	2
CP068277.2:74 568 854	3 708	LINE (L1)	CRYZ	Intron	2
CP068277.2:76 228 904	312	SINE (Alu)	ST6GALNAC3	Intron	2
CP068277.2:76 950 407	328	SINE (Alu)	PIGK	Intron	2
CP068277.2:77 006 803	316	SINE (Alu)	PIGK	Intron	2
CP068277.2:77 980 174	317	SINE (Alu)	LOC107984997	Intron	2
CP068277.2:81 683 953	322	SINE (Alu)	ADGRL2	Intron	2
CP068277.2:82 984 354	1 742	LINE (L1)	LINC01362	Intron	2
CP068277.2:86 739 975	127	Retroposon (SVA)	SELENOF	Intron	2
CP068277.2:89 748 218	268	SINE (Alu)	LRRC8D	Intron	2
CP068277.2:99 934 205	314	SINE (Alu)	SASS6	Intron	2
CP068277.2:107 637 360	308	SINE (Alu)	VAV3	Intron	2
CP068277.2:110 016 088	218	SINE (Alu)	AHCYL1	Intron	2
CP068277.2:111 310 361	61	LINE (L1)	CHIA	Intron	2
CP068277.2:111 595 921	320	SINE (Alu)	RAP1A	Intron	2
CP068277.2:114 512 654	311	SINE (Alu)	TRIM33	Intron	2
CP068277.2:114 670 214	304	SINE (Alu)	DENND2C	Intron	2
CP068277.2:117 439 865	79	Retroposon (SVA)	MAN1A2	Intron	2
CP068277.2:117 557 840	221	SINE (Alu)	VPS25P1	Promoter	2
CP068277.2:152 298 029	256	LINE (L1)	SPRR2G	Intron	2
CP068277.2:155 092 707	320	SINE (Alu)	ARHGEF2	Intron	2
CP068277.2:156 402 821	137	SINE (Alu)	LOC105371456	Intron	2
CP068277.2:165 036 498	272	SINE (Alu)	ALDH9A1	Intron	2
CP068277.2:166 450 102	62	LTR (ERVL)	STYXL2	Intron	2
CP068277.2:170 038 643	96	SINE (Alu)	PRRX1	Intron	2
CP068277.2:178 877 823	353	SINE (Alu)	AXDND1	Intron	2
CP068277.2:180 056 924	281	LINE (L1)	XPR1	Intron	2
CP068277.2:181 811 277	323	SINE (Alu)	RGSL1	Intron	2
CP068277.2:188 371 799	328	SINE (Alu)	LINC01035	Intron	2
CP068277.2:191 194 817	318	SINE (Alu)	LINC02770	Intron	2
CP068277.2:196 178 912	323	SINE (Alu)	CFHR4	Intron	2
CP068277.2:203 533 894	317	SINE (Alu)	PLEKHA6	Intron	2
CP068277.2:209 360 883	317	SINE (Alu)	SYT14	Intron	2
CP068277.2:209 987 125	121	SINE (Alu)	LOC105372901	Intron	2
CP068277.2:210 357 650	119	Retroposon (SVA)	KCNH1	Intron	1
CP068277.2:211 713 734	85	SINE (Alu)	LINC02771	Intron	2
CP068277.2:211 837 436	315	SINE (Alu)	ATF3	Intron	2
CP068277.2:214 261 398	54	LTR (ERVL)	KCNK2	Intron	2
CP068277.2:214 351 830	317	SINE (Alu)	KCNK2	Intron	2
CP068277.2:216 139 844	330	SINE (Alu)	ESRRG	Intron	2
CP068277.2:217 069 272	325	SINE (Alu)	SPATA17	Intron	2
CP068277.2:218 986 191	318	SINE (Alu)	LOC105372926	Intron	2
CP068277.2:220 020 709	318	SINE (Alu)	MTARC2	Intron	2
CP068277.2:221 722 389	173	Retroposon (SVA)	LOC124905750	Intron	1
CP068277.2:221 931 096	328	SINE (Alu)	AIDA	Intron	2
CP068277.2:222 361 090	330	SINE (Alu)	TLR5	Intron	2
CP068277.2:226 463 590	323	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:226 503 107	134	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:230 329 881	305	SINE (Alu)	TTC13	Intron	2
CP068277.2:232 592 710	314	SINE (Alu)	PCNX2	Intron	2
CP068277.2:233 657 577	51	Retroposon (SVA)	SLC35F3	Intron	2
CP068277.2:235 777 228	2 105	Retroposon (SVA)	EDARADD	Intron	2
CP068277.2:239 055 414	282	LINE (L1)	CHRM3	Intron	2
CP068277.2:242 625 619	323	SINE (Alu)	CEP170	Intron	2
CP068277.2:245 851 672	318	SINE (Alu)	SMYD3	Intron	2
CP068277.2:246 075 792	133	SINE (Alu)	CNST	Intron	2
CP068277.2:246 295 973	301	SINE (Alu)	AHCTF1	Intron	2
CP068277.2:981 392	121	SINE (Alu)	SSU72	Intron	2

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 12 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068258.2:1 634 244	147	DNA (hAT)	SIRPB1	Intron	1
CP068258.2:55 000 758	56	DNA (hAT)	TSHZ2	Intron	1
CP068259.2:41 706 549	82	DNA (hAT)	NFKBIB	Intron	2
CP068262.2:71 260 009	200	DNA (TcMar)	LINC00922	Intron	2
CP068268.2:29 625 324	54	DNA (TcMar)	SVIL	Intron	2
CP068268.2:35 402 487	112	DNA (TcMar)	CCNY	Intron	2
CP068269.2:19 135 332	63	DNA (TcMar)	PLIN2	Intron	2
CP068270.2:1 952 883	263	DNA (hAT)	LOC105377781	Intron	2
CP068270.2:8 712 615	74	DNA (TcMar)	XKR6	Intron	2
CP068270.2:89 463 045	96	DNA (hAT)	LOC105375630	Intron	2
CP068272.2:167 189 769	54	DNA (TcMar)	PDE10A	Intron	1
CP068277.2:239 923 756	176	DNA (hAT)	GREM2	Intron	2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 472 TE deletions have been found, adding up to 2 861 occurrences among cases.
• These deletions have a mean prevalence per sample of 1.9 ± 0.23 (median of 2).
• The deletion length is in the range of 304-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 504, for a deleted ERVK sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.78 ± 0.25 (median of 0.75).
• With 727 (727 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 33 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is glucuronosyltransferase activity (0.0001476274), and the highest (among the lowest 10) is phosphatidylinositol binding (0.003421468). The ratio is 23.17637, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0015020	glucuronosyltransferase activity	10/738	36/20758	3.336e-07	0.0001476	0.0001339	10	0.01355
GO:0071889	14-3-3 protein binding	10/738	37/20758	4.427e-07	0.0001476	0.0001339	10	0.01355
GO:0005543	phospholipid binding	41/738	495/20758	5.114e-07	0.0001476	0.0001339	41	0.05556
GO:0046979	TAP2 binding	7/738	20/20758	3.608e-06	0.0007812	0.0007084	7	0.009485
GO:0005516	calmodulin binding	21/738	210/20758	2.055e-05	0.003144	0.002851	21	0.02846
GO:0005216	ion channel activity	36/738	480/20758	2.27e-05	0.003144	0.002851	36	0.04878
GO:0030881	beta-2-microglobulin binding	7/738	26/20758	2.541e-05	0.003144	0.002851	7	0.009485
GO:0051959	dynein light intermediate chain binding	7/738	27/20758	3.326e-05	0.003421	0.003102	7	0.009485
GO:0008569	minus-end-directed microtubule motor activity	6/738	19/20758	3.61e-05	0.003421	0.003102	6	0.00813
GO:0035091	phosphatidylinositol binding	25/738	288/20758	3.951e-05	0.003421	0.003102	25	0.03388
GO:0046978	TAP1 binding	7/738	29/20758	5.494e-05	0.004325	0.003922	7	0.009485
GO:0016757	glycosyltransferase activity	24/738	289/20758	0.0001119	0.008075	0.007322	24	0.03252
GO:0008194	UDP-glycosyltransferase activity	16/738	157/20758	0.0001548	0.01031	0.00935	16	0.02168
GO:0016758	hexosyltransferase activity	19/738	210/20758	0.0001903	0.01061	0.009625	19	0.02575
GO:0005080	protein kinase C binding	9/738	58/20758	0.0001932	0.01061	0.009625	9	0.0122
GO:0045296	cadherin binding	27/738	357/20758	0.0002038	0.01061	0.009625	27	0.03659
GO:0042578	phosphoric ester hydrolase activity	29/738	396/20758	0.0002084	0.01061	0.009625	29	0.0393
GO:0005096	GTPase activator activity	24/738	304/20758	0.0002405	0.01157	0.01049	24	0.03252
GO:0046873	metal ion transmembrane transporter activity	32/738	466/20758	0.0003188	0.01453	0.01317	32	0.04336
GO:0003779	actin binding	32/738	471/20758	0.0003839	0.01614	0.01464	32	0.04336
GO:0022836	gated channel activity	27/738	372/20758	0.0003914	0.01614	0.01464	27	0.03659
GO:0005085	guanyl-nucleotide exchange factor activity	20/738	245/20758	0.0005051	0.01924	0.01745	20	0.0271
GO:0005261	cation channel activity	26/738	360/20758	0.0005361	0.01924	0.01745	26	0.03523
GO:0015085	calcium ion transmembrane transporter activity	14/738	142/20758	0.0005486	0.01924	0.01745	14	0.01897
GO:0005262	calcium channel activity	13/738	126/20758	0.0005554	0.01924	0.01745	13	0.01762
GO:0098632	cell-cell adhesion mediator activity	8/738	54/20758	0.0006015	0.02004	0.01817	8	0.01084
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	5/738	21/20758	0.0007095	0.02194	0.0199	5	0.006775
GO:0019198	transmembrane receptor protein phosphatase activity	5/738	21/20758	0.0007095	0.02194	0.0199	5	0.006775
GO:0003774	cytoskeletal motor activity	12/738	118/20758	0.001017	0.03037	0.02754	12	0.01626
GO:0070679	inositol 1,4,5 trisphosphate binding	4/738	14/20758	0.001193	0.03443	0.03122	4	0.00542
GO:0046977	TAP binding	7/738	50/20758	0.001842	0.05075	0.04602	7	0.009485
GO:0098631	cell adhesion mediator activity	8/738	64/20758	0.001875	0.05075	0.04602	8	0.01084
GO:0046703	natural killer cell lectin-like receptor binding	5/738	27/20758	0.00236	0.06193	0.05615	5	0.006775
GO:0016791	phosphatase activity	21/738	300/20758	0.002573	0.06445	0.05844	21	0.02846
GO:0015385	sodium:proton antiporter activity	4/738	17/20758	0.002605	0.06445	0.05844	4	0.00542
GO:0015278	calcium-release channel activity	4/738	18/20758	0.003256	0.07663	0.06948	4	0.00542
GO:0045499	chemorepellent activity	5/738	29/20758	0.003274	0.07663	0.06948	5	0.006775
GO:1901981	phosphatidylinositol phosphate binding	15/738	191/20758	0.003511	0.08001	0.07255	15	0.02033
GO:0003777	microtubule motor activity	8/738	72/20758	0.003959	0.08578	0.07779	8	0.01084
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	4/738	19/20758	0.004009	0.08578	0.07779	4	0.00542
GO:0004721	phosphoprotein phosphatase activity	15/738	194/20758	0.004061	0.08578	0.07779	15	0.02033
GO:0005217	intracellular ligand-gated ion channel activity	5/738	31/20758	0.004418	0.08969	0.08133	5	0.006775
GO:0032356	oxidized DNA binding	3/738	10/20758	0.004454	0.08969	0.08133	3	0.004065
GO:0016798	hydrolase activity, acting on glycosyl bonds	12/738	142/20758	0.004814	0.09475	0.08592	12	0.01626
GO:0140828	metal cation:monoatomic cation antiporter activity	5/738	34/20758	0.00663	0.1276	0.1157	5	0.006775
GO:0051139	metal cation:proton antiporter activity	4/738	22/20758	0.006955	0.1309	0.1187	4	0.00542
GO:0044325	transmembrane transporter binding	11/738	131/20758	0.00712	0.1312	0.119	11	0.01491
GO:0001786	phosphatidylserine binding	7/738	64/20758	0.007478	0.1349	0.1223	7	0.009485
GO:0045505	dynein intermediate chain binding	5/738	37/20758	0.00952	0.1622	0.1471	5	0.006775
GO:0008143	poly(A) binding	4/738	24/20758	0.009552	0.1622	0.1471	4	0.00542
GO:0030215	semaphorin receptor binding	4/738	24/20758	0.009552	0.1622	0.1471	4	0.00542
GO:0022843	voltage-gated cation channel activity	12/738	156/20758	0.009962	0.1659	0.1504	12	0.01626
GO:0004674	protein serine/threonine kinase activity	27/738	470/20758	0.01025	0.1675	0.1519	27	0.03659
GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	5/738	38/20758	0.01065	0.1708	0.1549	5	0.006775
GO:0097110	scaffold protein binding	7/738	69/20758	0.01116	0.1758	0.1594	7	0.009485
GO:0051018	protein kinase A binding	6/738	55/20758	0.01307	0.2021	0.1833	6	0.00813
GO:0030165	PDZ domain binding	8/738	89/20758	0.01385	0.21	0.1904	8	0.01084
GO:0099604	ligand-gated calcium channel activity	4/738	27/20758	0.01451	0.21	0.1904	4	0.00542
GO:0004029	aldehyde dehydrogenase (NAD+) activity	3/738	15/20758	0.01479	0.21	0.1904	3	0.004065
GO:0030553	cGMP binding	3/738	15/20758	0.01479	0.21	0.1904	3	0.004065
GO:0034236	protein kinase A catalytic subunit binding	3/738	15/20758	0.01479	0.21	0.1904	3	0.004065
GO:0015079	potassium ion transmembrane transporter activity	12/738	166/20758	0.01571	0.2195	0.199	12	0.01626
GO:0051117	ATPase binding	8/738	92/20758	0.01666	0.229	0.2077	8	0.01084
GO:0003953	NAD+ nucleosidase activity	3/738	16/20758	0.01773	0.2292	0.2078	3	0.004065
GO:0015386	potassium:proton antiporter activity	3/738	16/20758	0.01773	0.2292	0.2078	3	0.004065
GO:0050135	NAD(P)+ nucleosidase activity	3/738	16/20758	0.01773	0.2292	0.2078	3	0.004065
GO:0061809	NAD+ nucleotidase, cyclic ADP-ribose generating	3/738	16/20758	0.01773	0.2292	0.2078	3	0.004065
GO:0004725	protein tyrosine phosphatase activity	9/738	112/20758	0.01845	0.2321	0.2105	9	0.0122
GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	4/738	29/20758	0.01857	0.2321	0.2105	4	0.00542
GO:0008081	phosphoric diester hydrolase activity	8/738	95/20758	0.01985	0.2321	0.2105	8	0.01084
GO:0015276	ligand-gated ion channel activity	11/738	152/20758	0.02006	0.2321	0.2105	11	0.01491
GO:0022834	ligand-gated channel activity	11/738	152/20758	0.02006	0.2321	0.2105	11	0.01491
GO:0005244	voltage-gated ion channel activity	14/738	213/20758	0.02042	0.2321	0.2105	14	0.01897
GO:0022832	voltage-gated channel activity	14/738	213/20758	0.02042	0.2321	0.2105	14	0.01897
GO:0051393	alpha-actinin binding	4/738	30/20758	0.02084	0.2321	0.2105	4	0.00542
GO:0070717	poly-purine tract binding	4/738	30/20758	0.02084	0.2321	0.2105	4	0.00542
GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	3/738	17/20758	0.02098	0.2321	0.2105	3	0.004065
GO:0008484	sulfuric ester hydrolase activity	3/738	17/20758	0.02098	0.2321	0.2105	3	0.004065
GO:0015298	solute:cation antiporter activity	5/738	45/20758	0.02118	0.2321	0.2105	5	0.006775
GO:0072341	modified amino acid binding	8/738	97/20758	0.02221	0.2404	0.218	8	0.01084
GO:0017128	phospholipid scramblase activity	3/738	18/20758	0.02452	0.2588	0.2347	3	0.004065
GO:0030275	LRR domain binding	3/738	18/20758	0.02452	0.2588	0.2347	3	0.004065
GO:1902936	phosphatidylinositol bisphosphate binding	9/738	118/20758	0.02496	0.2588	0.2347	9	0.0122
GO:0140303	intramembrane lipid transporter activity	5/738	47/20758	0.0251	0.2588	0.2347	5	0.006775
GO:0017124	SH3 domain binding	10/738	139/20758	0.02682	0.2732	0.2478	10	0.01355
GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	3/738	19/20758	0.02837	0.2755	0.2499	3	0.004065
GO:0030169	low-density lipoprotein particle binding	3/738	19/20758	0.02837	0.2755	0.2499	3	0.004065
GO:0005154	epidermal growth factor receptor binding	4/738	33/20758	0.02864	0.2755	0.2499	4	0.00542
GO:0005451	monovalent cation:proton antiporter activity	4/738	33/20758	0.02864	0.2755	0.2499	4	0.00542
GO:0015299	solute:proton antiporter activity	4/738	33/20758	0.02864	0.2755	0.2499	4	0.00542
GO:0005249	voltage-gated potassium channel activity	8/738	102/20758	0.02896	0.2756	0.2499	8	0.01084
GO:0099094	ligand-gated cation channel activity	9/738	122/20758	0.03012	0.2835	0.2571	9	0.0122
GO:0005548	phospholipid transporter activity	6/738	67/20758	0.03159	0.2942	0.2667	6	0.00813
GO:0001972	retinoic acid binding	3/738	20/20758	0.03251	0.2964	0.2687	3	0.004065
GO:0052745	inositol phosphate phosphatase activity	3/738	20/20758	0.03251	0.2964	0.2687	3	0.004065
GO:0106310	protein serine kinase activity	21/738	383/20758	0.03372	0.3042	0.2758	21	0.02846
GO:0005251	delayed rectifier potassium channel activity	4/738	35/20758	0.03467	0.3096	0.2807	4	0.00542
GO:0005267	potassium channel activity	9/738	126/20758	0.03598	0.3137	0.2845	9	0.0122
GO:0015125	bile acid transmembrane transporter activity	3/738	21/20758	0.03695	0.3137	0.2845	3	0.004065
GO:0019200	carbohydrate kinase activity	3/738	21/20758	0.03695	0.3137	0.2845	3	0.004065

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of natural killer cell activation (1.187899e-09), and the highest (among the lowest 10) is negative regulation of secretion by cell (0.0002284739). The ratio is 192334.51, i.e., they differ in 5 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032815	negative regulation of natural killer cell activation	12/728	20/21069	2.589e-13	1.188e-09	1.107e-09	12	0.01648
GO:0043321	regulation of natural killer cell degranulation	7/728	10/21069	6.264e-09	9.58e-06	8.924e-06	7	0.009615
GO:0043323	positive regulation of natural killer cell degranulation	7/728	10/21069	6.264e-09	9.58e-06	8.924e-06	7	0.009615
GO:0051048	negative regulation of secretion	25/728	203/21069	3.923e-08	4.194e-05	3.906e-05	25	0.03434
GO:0010975	regulation of neuron projection development	41/728	468/21069	5.351e-08	4.194e-05	3.906e-05	41	0.05632
GO:0052695	cellular glucuronidation	9/728	24/21069	5.484e-08	4.194e-05	3.906e-05	9	0.01236
GO:0032814	regulation of natural killer cell activation	13/728	59/21069	8.398e-08	5.505e-05	5.127e-05	13	0.01786
GO:0006063	uronic acid metabolic process	9/728	29/21069	3.597e-07	0.0001833	0.0001708	9	0.01236
GO:0019585	glucuronate metabolic process	9/728	29/21069	3.597e-07	0.0001833	0.0001708	9	0.01236
GO:1903531	negative regulation of secretion by cell	21/728	171/21069	4.98e-07	0.0002285	0.0002128	21	0.02885
GO:0043320	natural killer cell degranulation	7/728	17/21069	8.21e-07	0.0003424	0.000319	7	0.009615
GO:0016358	dendrite development	26/728	262/21069	1.52e-06	0.0005811	0.0005413	26	0.03571
GO:0045920	negative regulation of exocytosis	10/728	44/21069	1.952e-06	0.0006888	0.0006417	10	0.01374
GO:0043301	negative regulation of leukocyte degranulation	7/728	20/21069	2.989e-06	0.0009794	0.0009123	7	0.009615
GO:0002725	negative regulation of T cell cytokine production	7/728	21/21069	4.35e-06	0.001286	0.001198	7	0.009615
GO:0048813	dendrite morphogenesis	18/728	150/21069	4.486e-06	0.001286	0.001198	18	0.02473
GO:1903306	negative regulation of regulated secretory pathway	8/728	31/21069	7.616e-06	0.002055	0.001915	8	0.01099
GO:0051056	regulation of small GTPase mediated signal transduction	29/728	343/21069	9.486e-06	0.002418	0.002252	29	0.03984
GO:0002477	antigen processing and presentation of exogenous peptide antigen via MHC class Ib	7/728	24/21069	1.183e-05	0.002855	0.00266	7	0.009615
GO:0032816	positive regulation of natural killer cell activation	8/728	37/21069	3.103e-05	0.007118	0.00663	8	0.01099
GO:0002475	antigen processing and presentation via MHC class Ib	8/728	40/21069	5.64e-05	0.01232	0.01148	8	0.01099
GO:0002476	antigen processing and presentation of endogenous peptide antigen via MHC class Ib	7/728	31/21069	7.277e-05	0.01452	0.01352	7	0.009615
GO:0043302	positive regulation of leukocyte degranulation	7/728	31/21069	7.277e-05	0.01452	0.01352	7	0.009615
GO:0098742	cell-cell adhesion via plasma-membrane adhesion molecules	24/728	293/21069	8.98e-05	0.01717	0.01599	24	0.03297
GO:0046580	negative regulation of Ras protein signal transduction	9/728	55/21069	0.0001023	0.01877	0.01748	9	0.01236
GO:0002428	antigen processing and presentation of peptide antigen via MHC class Ib	7/728	33/21069	0.0001113	0.01964	0.0183	7	0.009615
GO:0045953	negative regulation of natural killer cell mediated cytotoxicity	12/728	98/21069	0.0001417	0.02399	0.02234	12	0.01648
GO:0007411	axon guidance	21/728	248/21069	0.0001533	0.02399	0.02234	21	0.02885
GO:0002716	negative regulation of natural killer cell mediated immunity	12/728	99/21069	0.0001562	0.02399	0.02234	12	0.01648
GO:0071709	membrane assembly	10/728	71/21069	0.0001568	0.02399	0.02234	10	0.01374
GO:0097485	neuron projection guidance	21/728	249/21069	0.0001621	0.02399	0.02235	21	0.02885
GO:0007409	axonogenesis	32/728	468/21069	0.0002088	0.02903	0.02704	32	0.04396
GO:0007158	neuron cell-cell adhesion	5/728	17/21069	0.0002127	0.02903	0.02704	5	0.006868
GO:0046578	regulation of Ras protein signal transduction	19/728	218/21069	0.0002151	0.02903	0.02704	19	0.0261
GO:0050770	regulation of axonogenesis	16/728	168/21069	0.0002456	0.03096	0.02884	16	0.02198
GO:0044091	membrane biogenesis	10/728	75/21069	0.0002488	0.03096	0.02884	10	0.01374
GO:0010727	negative regulation of hydrogen peroxide metabolic process	4/728	10/21069	0.0002513	0.03096	0.02884	4	0.005495
GO:0007605	sensory perception of sound	16/728	169/21069	0.0002627	0.03096	0.02884	16	0.02198
GO:0051058	negative regulation of small GTPase mediated signal transduction	9/728	62/21069	0.0002632	0.03096	0.02884	9	0.01236
GO:0001911	negative regulation of leukocyte mediated cytotoxicity	12/728	105/21069	0.0002733	0.03135	0.0292	12	0.01648
GO:0030101	natural killer cell activation	15/728	155/21069	0.0003196	0.03576	0.03331	15	0.0206
GO:0031342	negative regulation of cell killing	12/728	108/21069	0.0003555	0.03844	0.03581	12	0.01648
GO:0045921	positive regulation of exocytosis	11/728	93/21069	0.0003607	0.03844	0.03581	11	0.01511
GO:0060537	muscle tissue development	30/728	442/21069	0.0003686	0.03844	0.03581	30	0.04121
GO:0002323	natural killer cell activation involved in immune response	7/728	40/21069	0.0003939	0.03954	0.03683	7	0.009615
GO:0051250	negative regulation of lymphocyte activation	19/728	229/21069	0.000401	0.03954	0.03683	19	0.0261
GO:0009100	glycoprotein metabolic process	29/728	424/21069	0.0004051	0.03954	0.03683	29	0.03984
GO:0017157	regulation of exocytosis	19/728	230/21069	0.0004233	0.04046	0.03769	19	0.0261
GO:0050954	sensory perception of mechanical stimulus	17/728	197/21069	0.0005086	0.04762	0.04436	17	0.02335
GO:0010728	regulation of hydrogen peroxide biosynthetic process	4/728	12/21069	0.0005606	0.05043	0.04697	4	0.005495
GO:0097105	presynaptic membrane assembly	4/728	12/21069	0.0005606	0.05043	0.04697	4	0.005495
GO:0001913	T cell mediated cytotoxicity	12/728	115/21069	0.0006316	0.05346	0.04979	12	0.01648
GO:0007018	microtubule-based movement	29/728	436/21069	0.000634	0.05346	0.04979	29	0.03984
GO:0002369	T cell cytokine production	8/728	56/21069	0.0006408	0.05346	0.04979	8	0.01099
GO:0002724	regulation of T cell cytokine production	8/728	56/21069	0.0006408	0.05346	0.04979	8	0.01099
GO:0099068	postsynapse assembly	6/728	32/21069	0.0007005	0.05624	0.05239	6	0.008242
GO:0002486	antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent	7/728	44/21069	0.0007184	0.05624	0.05239	7	0.009615
GO:0007157	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	8/728	57/21069	0.0007232	0.05624	0.05239	8	0.01099
GO:0071320	cellular response to cAMP	8/728	57/21069	0.0007232	0.05624	0.05239	8	0.01099
GO:0051549	positive regulation of keratinocyte migration	4/728	13/21069	0.0007876	0.05829	0.05429	4	0.005495
GO:0097090	presynaptic membrane organization	4/728	13/21069	0.0007876	0.05829	0.05429	4	0.005495
GO:0099150	regulation of postsynaptic specialization assembly	4/728	13/21069	0.0007876	0.05829	0.05429	4	0.005495
GO:1903307	positive regulation of regulated secretory pathway	8/728	58/21069	0.0008139	0.05914	0.05509	8	0.01099
GO:0002695	negative regulation of leukocyte activation	20/728	262/21069	0.0008249	0.05914	0.05509	20	0.02747
GO:0060249	anatomical structure homeostasis	25/728	362/21069	0.0008627	0.06054	0.05639	25	0.03434
GO:0043087	regulation of GTPase activity	28/728	424/21069	0.0008709	0.06054	0.05639	28	0.03846
GO:0002347	response to tumor cell	8/728	59/21069	0.0009136	0.06256	0.05827	8	0.01099
GO:0034329	cell junction assembly	30/728	468/21069	0.000933	0.06285	0.05855	30	0.04121
GO:0045954	positive regulation of natural killer cell mediated cytotoxicity	7/728	46/21069	0.0009453	0.06285	0.05855	7	0.009615
GO:0050866	negative regulation of cell activation	21/728	285/21069	0.0009726	0.06292	0.05861	21	0.02885
GO:0098698	postsynaptic specialization assembly	5/728	23/21069	0.0009736	0.06292	0.05861	5	0.006868
GO:0045824	negative regulation of innate immune response	14/728	156/21069	0.001056	0.06663	0.06207	14	0.01923
GO:0007019	microtubule depolymerization	7/728	47/21069	0.001078	0.06663	0.06207	7	0.009615
GO:0060119	inner ear receptor cell development	7/728	47/21069	0.001078	0.06663	0.06207	7	0.009615
GO:0014706	striated muscle tissue development	20/728	268/21069	0.001089	0.06663	0.06207	20	0.02747
GO:0060117	auditory receptor cell development	5/728	24/21069	0.001195	0.07215	0.06721	5	0.006868
GO:0048738	cardiac muscle tissue development	19/728	251/21069	0.001215	0.07241	0.06745	19	0.0261
GO:0051047	positive regulation of secretion	23/728	333/21069	0.001362	0.08012	0.07463	23	0.03159
GO:0002710	negative regulation of T cell mediated immunity	7/728	49/21069	0.001387	0.08057	0.07505	7	0.009615
GO:0060986	endocrine hormone secretion	8/728	63/21069	0.001414	0.0806	0.07508	8	0.01099
GO:0009812	flavonoid metabolic process	4/728	15/21069	0.001423	0.0806	0.07508	4	0.005495
GO:0006949	syncytium formation	9/728	78/21069	0.00145	0.08115	0.07559	9	0.01236
GO:0006887	exocytosis	26/728	397/21069	0.001473	0.0813	0.07573	26	0.03571
GO:0046545	development of primary female sexual characteristics	11/728	110/21069	0.001489	0.0813	0.07573	11	0.01511
GO:0046660	female sex differentiation	12/728	127/21069	0.001515	0.08176	0.07616	12	0.01648
GO:0019835	cytolysis	6/728	37/21069	0.001552	0.08258	0.07692	6	0.008242
GO:0008038	neuron recognition	7/728	50/21069	0.001566	0.08258	0.07692	7	0.009615
GO:0071466	cellular response to xenobiotic stimulus	16/728	200/21069	0.001635	0.08439	0.07861	16	0.02198
GO:0006029	proteoglycan metabolic process	10/728	95/21069	0.001637	0.08439	0.07861	10	0.01374
GO:0014074	response to purine-containing compound	13/728	146/21069	0.001688	0.08605	0.08016	13	0.01786
GO:0002028	regulation of sodium ion transport	10/728	96/21069	0.001772	0.08934	0.08322	10	0.01374
GO:0051547	regulation of keratinocyte migration	4/728	16/21069	0.001846	0.09126	0.08501	4	0.005495
GO:0035249	synaptic transmission, glutamatergic	11/728	113/21069	0.00185	0.09126	0.08501	11	0.01511
GO:0010634	positive regulation of epithelial cell migration	15/728	184/21069	0.001875	0.09151	0.08524	15	0.0206
GO:0002484	antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway	7/728	52/21069	0.001976	0.09445	0.08798	7	0.009615
GO:0051489	regulation of filopodium assembly	7/728	52/21069	0.001976	0.09445	0.08798	7	0.009615
GO:0099175	regulation of postsynapse organization	10/728	98/21069	0.002069	0.09693	0.09029	10	0.01374
GO:0001894	tissue homeostasis	21/728	303/21069	0.00207	0.09693	0.09029	21	0.02885
GO:0099054	presynapse assembly	7/728	53/21069	0.00221	0.1024	0.09542	7	0.009615
GO:0070593	dendrite self-avoidance	4/728	17/21069	0.002348	0.1077	0.1004	4	0.005495

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is MHC class Ib protein complex (7.090689e-05), and the highest (among the lowest 10) is catenin complex (0.004081384). The ratio is 57.55976, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 75 rows for significant categories.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032398	MHC class Ib protein complex	7/755	14/22283	1.39e-07	7.091e-05	6.366e-05	7	0.009272
GO:0016010	dystrophin-associated glycoprotein complex	7/755	20/22283	2.628e-06	0.0004887	0.0004388	7	0.009272
GO:0098984	neuron to neuron synapse	32/755	383/22283	2.875e-06	0.0004887	0.0004388	32	0.04238
GO:0042383	sarcolemma	17/755	147/22283	1.052e-05	0.001206	0.001083	17	0.02252
GO:0090665	glycoprotein complex	7/755	25/22283	1.405e-05	0.001206	0.001083	7	0.009272
GO:0032279	asymmetric synapse	29/755	357/22283	1.419e-05	0.001206	0.001083	29	0.03841
GO:0014069	postsynaptic density	28/755	351/22283	2.756e-05	0.002008	0.001803	28	0.03709
GO:0099572	postsynaptic specialization	29/755	374/22283	3.358e-05	0.002141	0.001922	29	0.03841
GO:0005938	cell cortex	26/755	326/22283	5.295e-05	0.003	0.002694	26	0.03444
GO:0016342	catenin complex	7/755	32/22283	8.003e-05	0.004081	0.003664	7	0.009272
GO:0005858	axonemal dynein complex	6/755	24/22283	0.0001183	0.005486	0.004926	6	0.007947
GO:0098858	actin-based cell projection	21/755	253/22283	0.0001557	0.006616	0.00594	21	0.02781
GO:0030863	cortical cytoskeleton	13/755	120/22283	0.0002186	0.008576	0.0077	13	0.01722
GO:0030864	cortical actin cytoskeleton	11/755	92/22283	0.0002783	0.01014	0.009104	11	0.01457
GO:0036157	outer dynein arm	4/755	11/22283	0.0003567	0.01176	0.01056	4	0.005298
GO:0032421	stereocilium bundle	9/755	66/22283	0.0003689	0.01176	0.01056	9	0.01192
GO:0030175	filopodium	13/755	128/22283	0.0004129	0.01224	0.01099	13	0.01722
GO:0019897	extrinsic component of plasma membrane	16/755	180/22283	0.0004319	0.01224	0.01099	16	0.02119
GO:0032420	stereocilium	8/755	57/22283	0.0006371	0.0171	0.01535	8	0.0106
GO:0042612	MHC class I protein complex	7/755	46/22283	0.0008437	0.02151	0.01932	7	0.009272
GO:0055038	recycling endosome membrane	12/755	138/22283	0.002605	0.06326	0.05679	12	0.01589
GO:0097060	synaptic membrane	25/755	408/22283	0.003372	0.07817	0.07019	25	0.03311
GO:0031252	cell leading edge	27/755	457/22283	0.003898	0.08643	0.0776	27	0.03576
GO:1990752	microtubule end	5/755	33/22283	0.00476	0.1011	0.09081	5	0.006623
GO:0099568	cytoplasmic region	19/755	294/22283	0.005682	0.1159	0.1041	19	0.02517
GO:0055037	recycling endosome	17/755	254/22283	0.006151	0.1207	0.1083	17	0.02252
GO:0034703	cation channel complex	16/755	236/22283	0.006856	0.1289	0.1157	16	0.02119
GO:0031256	leading edge membrane	14/755	196/22283	0.007114	0.1289	0.1157	14	0.01854
GO:0034702	ion channel complex	20/755	323/22283	0.00733	0.1289	0.1157	20	0.02649
GO:0098978	glutamatergic synapse	21/755	354/22283	0.009699	0.1635	0.1468	21	0.02781
GO:0032587	ruffle membrane	9/755	106/22283	0.009938	0.1635	0.1468	9	0.01192
GO:0030286	dynein complex	6/755	56/22283	0.01143	0.1822	0.1636	6	0.007947
GO:0044304	main axon	7/755	74/22283	0.01259	0.1946	0.1747	7	0.009272
GO:0044753	amphisome	3/755	15/22283	0.013	0.195	0.1751	3	0.003974
GO:0032838	plasma membrane bounded cell projection cytoplasm	16/755	255/22283	0.01372	0.2	0.1795	16	0.02119
GO:0034705	potassium channel complex	8/755	94/22283	0.01446	0.2049	0.1839	8	0.0106
GO:0043034	costamere	3/755	16/22283	0.0156	0.2124	0.1907	3	0.003974
GO:0005912	adherens junction	13/755	195/22283	0.01583	0.2124	0.1907	13	0.01722
GO:0030055	cell-substrate junction	26/755	493/22283	0.01799	0.2298	0.2063	26	0.03444
GO:0097730	non-motile cilium	12/755	178/22283	0.01844	0.2298	0.2063	12	0.01589
GO:0098688	parallel fiber to Purkinje cell synapse	3/755	17/22283	0.01848	0.2298	0.2063	3	0.003974
GO:0098562	cytoplasmic side of membrane	14/755	222/22283	0.0195	0.2298	0.2063	14	0.01854
GO:0019898	extrinsic component of membrane	19/755	335/22283	0.02051	0.2298	0.2063	19	0.02517
GO:0097731	9+0 non-motile cilium	10/755	140/22283	0.02098	0.2298	0.2063	10	0.01325
GO:0030016	myofibril	15/755	246/22283	0.02099	0.2298	0.2063	15	0.01987
GO:0005930	axoneme	11/755	161/22283	0.02146	0.2298	0.2063	11	0.01457
GO:0032045	guanyl-nucleotide exchange factor complex	3/755	18/22283	0.02163	0.2298	0.2063	3	0.003974
GO:0044305	calyx of Held	3/755	18/22283	0.02163	0.2298	0.2063	3	0.003974
GO:0097014	ciliary plasm	11/755	162/22283	0.02234	0.2325	0.2088	11	0.01457
GO:0008076	voltage-gated potassium channel complex	7/755	84/22283	0.0238	0.2428	0.218	7	0.009272
GO:0043204	perikaryon	11/755	168/22283	0.02824	0.2766	0.2483	11	0.01457
GO:0043292	contractile fiber	15/755	256/22283	0.02864	0.2766	0.2483	15	0.01987
GO:0005828	kinetochore microtubule	3/755	20/22283	0.02874	0.2766	0.2483	3	0.003974
GO:0032426	stereocilium tip	3/755	21/22283	0.03271	0.2861	0.2569	3	0.003974
GO:0098862	cluster of actin-based cell projections	11/755	172/22283	0.03274	0.2861	0.2569	11	0.01457
GO:0030672	synaptic vesicle membrane	9/755	130/22283	0.03294	0.2861	0.2569	9	0.01192
GO:0099501	exocytic vesicle membrane	9/755	130/22283	0.03294	0.2861	0.2569	9	0.01192
GO:0031594	neuromuscular junction	6/755	71/22283	0.03309	0.2861	0.2569	6	0.007947
GO:0001726	ruffle	12/755	194/22283	0.0331	0.2861	0.2569	12	0.01589
GO:0001917	photoreceptor inner segment	6/755	72/22283	0.0351	0.2977	0.2673	6	0.007947
GO:0030315	T-tubule	5/755	54/22283	0.03561	0.2977	0.2673	5	0.006623
GO:0150034	distal axon	16/755	290/22283	0.03912	0.3102	0.2785	16	0.02119
GO:0032154	cleavage furrow	5/755	56/22283	0.04074	0.3102	0.2785	5	0.006623
GO:0060076	excitatory synapse	5/755	56/22283	0.04074	0.3102	0.2785	5	0.006623
GO:0035371	microtubule plus-end	3/755	23/22283	0.04145	0.3102	0.2785	3	0.003974
GO:0099240	intrinsic component of synaptic membrane	11/755	179/22283	0.0418	0.3102	0.2785	11	0.01457
GO:0032437	cuticular plate	2/755	10/22283	0.04308	0.3102	0.2785	2	0.002649
GO:0098981	cholinergic synapse	2/755	10/22283	0.04308	0.3102	0.2785	2	0.002649
GO:0044306	neuron projection terminus	9/755	137/22283	0.04372	0.3102	0.2785	9	0.01192
GO:0035097	histone methyltransferase complex	6/755	76/22283	0.04394	0.3102	0.2785	6	0.007947
GO:0045211	postsynaptic membrane	16/755	296/22283	0.04564	0.3102	0.2785	16	0.02119
GO:0030017	sarcomere	13/755	227/22283	0.04619	0.3102	0.2785	13	0.01722
GO:0032433	filopodium tip	3/755	24/22283	0.04622	0.3102	0.2785	3	0.003974
GO:0030018	Z disc	9/755	139/22283	0.04719	0.3102	0.2785	9	0.01192
GO:0032153	cell division site	6/755	78/22283	0.04884	0.3102	0.2785	6	0.007947

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

No significant results were found in NCG.