Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

  • 2 844 unique TE insertions, which amount to a total of 5 348 occurrences among all samples.
  • With any insertion appearing on 1.9 ± 0.32 samples (median of 2 occurrences/insertion).
  • The average insertion count per case is 2 674 ± 28.3.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

  • 2 180 TE insertions.
  • A total of 4 185 calls across cases.
  • A mean prevalence of 1.9 ± 0.27.
  • The median prevalence is 2.
  • Each sample carries an average of 2 092.5 ± 17.7 TE insertions.

1.2 Genotyping

  • 177 unique insertions that passed the stringent filtering. (8.1% of the total unique insertions), had at least one occurrence genotyped as 0/0.

  • These amount to 224 total count (5.4% of filter-passing occurrences).

  • 111 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 158 insertion counts.

  • Of these fully wrong calls, 64 were only found on a single patient each (57.7% of the 111).

  • The strict criteria missed calls for 60 unique insertions (2.8%).

  • These mean a total of 60 occurrences, out of 4 185 calls that passed the stringent filter.

  • 60 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion

Unique INS with false positives (%)

Total false positives (%)

Unique INS (total) with all false positives

Unique INS with false negatives (%)

Total false negatives (Total positives)

Unique INS with more false negatives than positives

Strict

177
( 8.1)

224
(5.4)

111
(158)

60
(2.8)

60
(4 185)

60

Lax

343
(12.1)

438
(8.2)

258
(353)

0
(0.0)

0
(5 348)

0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

586 TE insertions were found on all cases in homozygosis.

Click to show table with 586 rows.

Position

Length

Type

AF

CP068277.2:6 326 450

177

SINE (AluYb8)

1

CP068277.2:16 114 184

43

SINE (Alu)

1

CP068277.2:16 575 488

38

LINE (L1M1)

1

CP068277.2:20 992 773

316

SINE (AluYa5)

1

CP068277.2:38 352 287

74

SINE (FRAM)

1

CP068277.2:45 094 599

48

Retroposon (SVA_F)

1

CP068277.2:45 201 578

326

SINE (AluYb8)

1

CP068277.2:46 119 460

48

Retroposon (SVA_F)

1

CP068277.2:57 484 949

211

SINE (AluYk2)

1

CP068277.2:61 803 773

316

SINE (AluYc)

1

CP068277.2:65 547 882

309

SINE (AluY)

1

CP068277.2:76 472 686

280

SINE (AluYa5)

1

CP068277.2:78 954 901

307

SINE (AluYb9)

1

CP068277.2:79 721 146

38

LTR (THE1D-int)

1

CP068277.2:80 225 123

320

SINE (AluYa5)

1

CP068277.2:86 116 050

715

LINE (L1HS)

1

CP068277.2:99 356 767

110

Retroposon (SVA_A)

1

CP068277.2:112 237 049

55

LINE (L1HS)

1

CP068277.2:112 786 134

225

Retroposon (SVA_F)

1

CP068277.2:112 911 196

48

Retroposon (SVA_F)

1

CP068277.2:114 512 654

311

SINE (AluYa5)

1

CP068277.2:117 439 865

79

Retroposon (SVA_F)

1

CP068277.2:158 899 112

27

LINE (L1P)

1

CP068277.2:178 395 729

46

Retroposon (SVA_F)

1

CP068277.2:188 371 799

328

SINE (AluYb8)

1

CP068277.2:189 038 638

67

LTR (MSTA)

1

CP068277.2:192 243 097

40

LTR (LTR12D)

1

CP068277.2:203 274 785

87

LTR (MSTA)

1

CP068277.2:203 533 894

317

SINE (AluYg6)

1

CP068277.2:210 459 290

89

SINE (AluJb)

1

CP068277.2:210 706 521

195

Retroposon (SVA_E)

1

CP068277.2:214 109 436

50

Retroposon (SVA_F)

1

CP068277.2:217 069 272

325

SINE (AluYa5)

1

CP068277.2:221 722 389

173

Retroposon (SVA_A)

1

CP068277.2:221 931 096

328

SINE (AluYb8)

1

CP068277.2:225 302 830

99

Retroposon (SVA_F)

1

CP068277.2:239 055 414

282

LINE (L1P1)

1

CP068277.2:241 802 064

38

SINE (Alu)

1

CP068276.2:1 468 423

331

SINE (AluY)

1

CP068276.2:7 902 007

54

LTR (HERVH-int)

1

CP068276.2:10 932 617

343

Retroposon (SVA_E)

1

CP068276.2:13 196 975

46

LTR (HERVH-int)

1

CP068276.2:13 955 731

74

LTR (MER57-int)

1

CP068276.2:44 604 010

317

SINE (AluYa5)

1

CP068276.2:46 682 545

49

SINE (Alu)

1

CP068276.2:50 018 018

133

SINE (AluSc8)

1

CP068276.2:54 440 636

319

SINE (AluY)

1

CP068276.2:54 460 543

253

SINE (AluY)

1

CP068276.2:64 083 532

30

LTR (LTR7B)

1

CP068276.2:64 261 146

63

LTR (HERVH-int)

1

CP068276.2:70 930 166

31

SINE (Alu)

1

CP068276.2:78 743 214

314

SINE (AluYa5)

1

CP068276.2:99 438 516

46

LINE (L1P1)

1

CP068276.2:102 198 725

316

SINE (AluYa5)

1

CP068276.2:123 008 476

317

SINE (AluYa5)

1

CP068276.2:123 569 366

134

SINE (AluSp)

1

CP068276.2:123 667 376

329

SINE (AluYb8)

1

CP068276.2:123 849 426

327

LINE (L1MD)

1

CP068276.2:128 316 576

322

SINE (AluY)

1

CP068276.2:141 752 388

57

LINE (L1M2)

1

CP068276.2:143 122 440

327

SINE (AluY)

1

CP068276.2:144 249 299

151

SINE (AluSp)

1

CP068276.2:145 037 173

324

SINE (AluYb8)

1

CP068276.2:158 030 254

326

SINE (AluYb9)

1

CP068276.2:159 759 795

324

SINE (AluYa5)

1

CP068276.2:169 505 778

318

SINE (AluYb8)

1

CP068276.2:170 052 507

48

Retroposon (SVA_F)

1

CP068276.2:173 773 579

313

SINE (AluYa5)

1

CP068276.2:174 714 647

320

SINE (AluY)

1

CP068276.2:177 936 293

332

SINE (AluYb8)

1

CP068276.2:177 969 024

339

SINE (AluYb8)

1

CP068276.2:188 126 192

73

Retroposon (SVA_A)

1

CP068276.2:191 887 362

478

Retroposon (SVA_E)

1

CP068276.2:192 183 560

313

SINE (AluYa5)

1

CP068276.2:192 186 024

319

SINE (AluYa5)

1

CP068276.2:192 230 647

48

Retroposon (SVA_F)

1

CP068276.2:194 169 722

48

Retroposon (SVA_F)

1

CP068276.2:196 356 056

274

SINE (AluYa5)

1

CP068276.2:197 233 937

329

SINE (AluYb8)

1

CP068276.2:200 963 887

44

SINE (FRAM)

1

CP068276.2:201 256 725

968

LINE (L1HS)

1

CP068276.2:207 594 378

322

SINE (AluYb8)

1

CP068276.2:208 081 694

315

SINE (AluY)

1

CP068276.2:209 066 826

324

SINE (AluYb9)

1

CP068276.2:215 319 684

77

Retroposon (SVA_F)

1

CP068276.2:215 369 783

158

SINE (AluYb9)

1

CP068276.2:216 174 633

133

SINE (AluJo)

1

CP068276.2:223 302 437

127

Retroposon (SVA_F)

1

CP068276.2:226 634 805

245

SINE (AluYa5)

1

CP068276.2:233 687 447

149

SINE (AluSg)

1

CP068276.2:234 212 774

50

Retroposon (SVA_F)

1

CP068276.2:235 675 687

327

SINE (AluYb8)

1

CP068275.2:2 584 962

312

SINE (AluYa5)

1

CP068275.2:20 459 977

66

LTR (LTR25-int)

1

CP068275.2:28 800 764

330

SINE (AluY)

1

CP068275.2:29 581 534

322

SINE (AluYb8)

1

CP068275.2:32 005 645

94

LTR (LTR65)

1

CP068275.2:38 085 680

299

Retroposon (SVA_F)

1

CP068275.2:38 119 250

134

SINE (AluJb)

1

CP068275.2:50 054 724

268

SINE (AluYa5)

1

CP068275.2:50 341 806

97

Retroposon (SVA_F)

1

CP068275.2:50 833 539

39

Retroposon (SVA_C)

1

CP068275.2:50 871 694

344

SINE (AluYb8)

1

CP068275.2:65 941 603

35

LINE (L1PA6)

1

CP068275.2:80 303 273

45

LINE (L1PREC2)

1

CP068275.2:83 763 966

254

LINE (L1PA8A)

1

CP068275.2:96 460 083

73

Retroposon (SVA_A)

1

CP068275.2:101 102 912

79

LINE (L1P4)

1

CP068275.2:104 176 252

323

SINE (AluYb8)

1

CP068275.2:104 197 720

134

SINE (AluJb)

1

CP068275.2:114 228 328

335

SINE (AluY)

1

CP068275.2:114 926 706

49

LINE (L1P3)

1

CP068275.2:125 499 397

48

Retroposon (SVA_F)

1

CP068275.2:125 500 129

36

Retroposon (SVA_D)

1

CP068275.2:127 413 483

316

SINE (AluYa5)

1

CP068275.2:128 621 623

187

LTR (LTR16A1)

1

CP068275.2:132 084 525

48

Retroposon (SVA_F)

1

CP068275.2:132 210 422

310

SINE (AluYb8)

1

CP068275.2:136 876 079

57

LINE (L1MCa)

1

CP068275.2:143 907 036

50

LINE (L1PA12)

1

CP068275.2:145 833 710

401

Retroposon (SVA_E)

1

CP068275.2:147 504 053

77

LTR (LTR12D)

1

CP068275.2:148 281 506

322

SINE (AluY)

1

CP068275.2:150 907 914

41

LTR (HERVH-int)

1

CP068275.2:174 782 744

118

LTR (LTR12C)

1

CP068275.2:175 468 147

318

SINE (AluYa5)

1

CP068275.2:189 692 114

77

Retroposon (SVA_F)

1

CP068275.2:192 214 801

326

SINE (AluYa5)

1

CP068275.2:193 768 251

318

SINE (AluY)

1

CP068275.2:200 460 370

71

SINE (AluJb)

1

CP068274.2:2 568 818

317

SINE (AluYa5)

1

CP068274.2:4 004 477

80

LTR (HERVH-int)

1

CP068274.2:4 038 891

319

SINE (AluYb9)

1

CP068274.2:4 318 468

65

LTR (LTR12_v)

1

CP068274.2:9 950 436

248

SINE (AluY)

1

CP068274.2:9 954 701

316

SINE (AluYi6)

1

CP068274.2:15 773 375

496

Retroposon (SVA_F)

1

CP068274.2:16 374 994

121

Retroposon (SVA_D)

1

CP068274.2:34 499 227

331

SINE (AluYa5)

1

CP068274.2:36 292 569

314

SINE (AluYb8)

1

CP068274.2:39 378 562

322

SINE (AluYb8)

1

CP068274.2:39 675 502

162

SINE (AluSx)

1

CP068274.2:56 743 512

36

Retroposon (SVA_B)

1

CP068274.2:57 814 201

147

Retroposon (SVA_A)

1

CP068274.2:58 620 850

323

SINE (AluYb8)

1

CP068274.2:60 123 691

124

SINE (AluYb8)

1

CP068274.2:61 601 364

101

SINE (AluYa5)

1

CP068274.2:73 097 163

175

Retroposon (SVA_A)

1

CP068274.2:73 581 961

183

LINE (L1PA2)

1

CP068274.2:75 446 974

318

SINE (AluYa5)

1

CP068274.2:85 038 637

318

SINE (AluYa5)

1

CP068274.2:85 588 188

304

SINE (AluY)

1

CP068274.2:88 878 813

314

SINE (AluY)

1

CP068274.2:99 966 112

319

SINE (AluYb9)

1

CP068274.2:106 156 930

45

SINE (AluSz6)

1

CP068274.2:108 421 359

48

Retroposon (SVA_F)

1

CP068274.2:109 710 152

64

LINE (L1M4c)

1

CP068274.2:111 379 802

39

Retroposon (SVA_A)

1

CP068274.2:113 652 393

31

LINE (L1P4)

1

CP068274.2:125 038 429

37

LTR (MLT1A1)

1

CP068274.2:137 536 644

412

LTR (HERVL40-int)

1

CP068274.2:138 329 412

314

SINE (AluY)

1

CP068274.2:139 713 216

57

SINE (AluSp)

1

CP068274.2:143 337 477

151

SINE (AluYa5)

1

CP068274.2:153 984 112

98

Retroposon (SVA_F)

1

CP068274.2:154 329 485

41

SINE (Alu)

1

CP068274.2:154 538 668

126

Retroposon (SVA_F)

1

CP068274.2:154 686 326

82

SINE (AluYc)

1

CP068274.2:168 367 484

123

Retroposon (SVA_F)

1

CP068274.2:168 367 837

39

Retroposon (SVA_C)

1

CP068274.2:168 615 609

326

SINE (AluYa5)

1

CP068274.2:171 244 192

111

LTR (MER4A)

1

CP068274.2:176 462 509

319

SINE (AluYi6)

1

CP068274.2:176 567 723

316

SINE (AluY)

1

CP068274.2:177 952 805

327

SINE (AluY)

1

CP068274.2:182 677 404

315

SINE (AluYi6)

1

CP068274.2:186 157 092

181

LTR (HERVH-int)

1

CP068274.2:186 384 582

39

Retroposon (SVA_C)

1

CP068274.2:189 838 124

54

SINE (AluJb)

1

CP068273.2:12 123 869

302

SINE (AluYa5)

1

CP068273.2:12 256 876

29

LINE (L1PA14)

1

CP068273.2:13 792 771

314

SINE (AluYa5)

1

CP068273.2:24 017 957

286

SINE (AluY)

1

CP068273.2:25 758 140

221

LINE (L1P1)

1

CP068273.2:27 677 538

122

SINE (AluJb)

1

CP068273.2:29 034 806

73

Retroposon (SVA_A)

1

CP068273.2:38 033 738

92

LTR (Harlequin-int)

1

CP068273.2:40 437 907

307

SINE (AluYa5)

1

CP068273.2:43 233 657

86

Retroposon (SVA_F)

1

CP068273.2:46 415 440

334

SINE (AluY)

1

CP068273.2:66 799 023

345

Retroposon (SVA_F)

1

CP068273.2:77 294 343

50

Retroposon (SVA_F)

1

CP068273.2:77 456 269

295

SINE (AluYd8)

1

CP068273.2:92 669 299

337

SINE (AluYa5)

1

CP068273.2:100 778 993

312

SINE (AluYb8)

1

CP068273.2:103 260 600

40

LTR (LTR12E)

1

CP068273.2:104 621 581

46

SINE (Alu)

1

CP068273.2:108 350 701

102

LINE (L1M5)

1

CP068273.2:109 193 523

311

SINE (AluYa5)

1

CP068273.2:111 960 940

186

SINE (AluYc)

1

CP068273.2:116 441 257

27

LTR (LTR10F)

1

CP068273.2:118 013 084

305

SINE (AluY)

1

CP068273.2:121 495 295

313

SINE (AluYa5)

1

CP068273.2:125 544 797

317

SINE (AluYk2)

1

CP068273.2:138 669 937

65

LTR (LTR12)

1

CP068273.2:139 924 858

295

SINE (AluSx)

1

CP068273.2:141 287 230

91

SINE (FLAM_C)

1

CP068273.2:155 191 230

317

SINE (AluYb8)

1

CP068273.2:156 028 237

117

LINE (L1HS)

1

CP068273.2:160 223 574

316

SINE (AluYg6)

1

CP068273.2:161 633 327

329

SINE (AluYb8)

1

CP068273.2:180 746 045

174

SINE (AluY)

1

CP068273.2:181 314 056

267

LINE (L1P1)

1

CP068272.2:5 704 809

325

Retroposon (SVA_F)

1

CP068272.2:7 310 938

81

LTR (LTR12D)

1

CP068272.2:10 902 109

134

SINE (AluSz)

1

CP068272.2:21 225 613

62

SINE (AluYb8)

1

CP068272.2:23 848 830

322

SINE (AluY)

1

CP068272.2:26 622 355

332

SINE (AluY)

1

CP068272.2:28 094 492

330

SINE (AluYb8)

1

CP068272.2:30 339 365

39

Retroposon (SVA_D)

1

CP068272.2:32 628 076

315

SINE (AluYa5)

1

CP068272.2:36 183 676

101

LTR (LTR12C)

1

CP068272.2:36 767 743

98

Retroposon (SVA_F)

1

CP068272.2:38 355 201

136

LTR (MER11A)

1

CP068272.2:38 788 666

48

Retroposon (SVA_F)

1

CP068272.2:42 430 462

160

SINE (AluSg4)

1

CP068272.2:43 757 249

317

SINE (AluYa5)

1

CP068272.2:45 835 182

326

SINE (AluY)

1

CP068272.2:53 623 893

313

SINE (AluYa5)

1

CP068272.2:62 724 632

133

SINE (AluSp)

1

CP068272.2:68 954 952

318

SINE (AluYa5)

1

CP068272.2:86 651 703

331

SINE (AluY)

1

CP068272.2:103 468 739

127

LTR (HERVH-int)

1

CP068272.2:105 078 139

324

SINE (AluY)

1

CP068272.2:109 131 038

272

Retroposon (SVA_A)

1

CP068272.2:115 951 898

105

SINE (AluSc)

1

CP068272.2:123 028 920

103

LINE (L2a)

1

CP068272.2:126 080 528

40

LTR (LTR12C)

1

CP068272.2:142 199 746

131

LTR (LTR12)

1

CP068272.2:159 090 611

39

LTR (LTR8)

1

CP068272.2:167 189 769

54

DNA (Tigger3c)

1

CP068271.2:2 382 174

77

Retroposon (SVA_F)

1

CP068271.2:12 396 185

31

SINE (AluSg)

1

CP068271.2:15 262 062

60

LTR (MER89)

1

CP068271.2:23 776 953

125

Retroposon (SVA_F)

1

CP068271.2:29 929 681

37

LTR (HERVH-int)

1

CP068271.2:38 447 505

50

LTR (LTR1)

1

CP068271.2:38 626 104

322

SINE (AluYa5)

1

CP068271.2:38 630 323

333

SINE (AluYb8)

1

CP068271.2:45 083 204

325

SINE (AluYb8)

1

CP068271.2:48 018 075

322

SINE (AluYa5)

1

CP068271.2:52 864 846

336

LINE (L1MCa)

1

CP068271.2:52 883 012

354

LINE (L1HS)

1

CP068271.2:56 334 427

323

SINE (AluYb8)

1

CP068271.2:56 369 757

300

SINE (AluYa5)

1

CP068271.2:68 364 737

319

SINE (AluYb8)

1

CP068271.2:75 037 069

48

Retroposon (SVA_F)

1

CP068271.2:78 216 802

318

SINE (AluYa5)

1

CP068271.2:82 300 766

294

SINE (AluYb8)

1

CP068271.2:84 473 621

314

SINE (AluYb8)

1

CP068271.2:84 568 344

317

SINE (AluYg6)

1

CP068271.2:85 121 772

186

SINE (AluYc)

1

CP068271.2:85 626 331

317

SINE (AluY)

1

CP068271.2:91 992 921

206

Retroposon (SVA_F)

1

CP068271.2:103 838 055

128

SINE (AluJb)

1

CP068271.2:110 968 119

328

SINE (AluYb8)

1

CP068271.2:115 628 405

310

SINE (AluYa5)

1

CP068271.2:119 569 637

300

SINE (AluYa5)

1

CP068271.2:119 758 768

317

SINE (AluYe5)

1

CP068271.2:121 741 949

31

SINE (Alu)

1

CP068271.2:122 631 790

80

LTR (HERVH-int)

1

CP068271.2:125 458 018

281

SINE (AluYk2)

1

CP068271.2:126 339 965

167

LTR (THE1-int)

1

CP068271.2:129 881 314

242

SINE (AluYa5)

1

CP068271.2:130 830 383

318

SINE (AluSx)

1

CP068271.2:136 812 007

329

SINE (AluYa5)

1

CP068271.2:146 522 789

32

LINE (L1P1)

1

CP068271.2:149 923 454

135

SINE (AluSz)

1

CP068271.2:150 461 892

48

Retroposon (SVA_F)

1

CP068271.2:153 713 300

130

SINE (AluSx)

1

CP068271.2:158 746 778

338

SINE (AluYb8)

1

CP068270.2:1 867 928

45

SINE (Alu)

1

CP068270.2:9 270 409

319

SINE (AluYa5)

1

CP068270.2:17 372 585

320

SINE (AluYk3)

1

CP068270.2:34 580 253

67

LINE (L1M3)

1

CP068270.2:40 175 476

60

LINE (L1MA3)

1

CP068270.2:40 184 959

324

SINE (AluYa5)

1

CP068270.2:41 686 987

332

SINE (AluYb8)

1

CP068270.2:51 522 000

311

SINE (AluYa5)

1

CP068270.2:51 532 733

48

Retroposon (SVA_F)

1

CP068270.2:51 604 354

118

LTR (LTR12C)

1

CP068270.2:54 436 680

313

SINE (AluYb8)

1

CP068270.2:60 716 533

316

SINE (AluYa5)

1

CP068270.2:88 868 126

317

SINE (AluYa5)

1

CP068270.2:89 463 045

96

DNA (MER53)

1

CP068270.2:90 822 117

48

Retroposon (SVA_F)

1

CP068270.2:93 464 949

163

LINE (L1PB2)

1

CP068270.2:96 503 803

231

SINE (AluJb)

1

CP068270.2:98 966 642

40

Retroposon (SVA_D)

1

CP068270.2:107 844 447

325

SINE (AluYb8)

1

CP068270.2:128 153 263

325

SINE (AluYb8)

1

CP068270.2:128 443 757

46

Retroposon (SVA_F)

1

CP068270.2:129 246 518

77

Retroposon (SVA_F)

1

CP068270.2:132 464 747

322

SINE (AluYa5)

1

CP068270.2:137 820 678

330

SINE (AluYb8)

1

CP068269.2:1 717 408

72

SINE (AluSc)

1

CP068269.2:6 795 504

39

Retroposon (SVA_D)

1

CP068269.2:7 855 153

326

SINE (AluYb9)

1

CP068269.2:22 072 341

76

SINE (AluSg4)

1

CP068269.2:30 020 771

69

LINE (L1M3)

1

CP068269.2:30 361 586

314

SINE (AluY)

1

CP068269.2:31 255 451

209

LTR (MER34B-int)

1

CP068269.2:32 923 481

65

LTR (LTR12)

1

CP068269.2:33 442 084

37

Retroposon (SVA_F)

1

CP068269.2:34 156 745

66

Retroposon (SVA_F)

1

CP068269.2:34 293 360

332

SINE (AluSp)

1

CP068269.2:35 940 130

31

SINE (Alu)

1

CP068269.2:38 265 890

78

Retroposon (SVA_A)

1

CP068269.2:41 137 102

322

SINE (AluYa5)

1

CP068269.2:81 331 129

317

SINE (AluYa5)

1

CP068269.2:84 265 383

48

SINE (Alu)

1

CP068269.2:88 666 159

315

SINE (AluYb8)

1

CP068269.2:96 285 775

31

SINE (Alu)

1

CP068269.2:97 437 226

307

SINE (AluY)

1

CP068269.2:104 997 511

137

Retroposon (SVA_F)

1

CP068269.2:104 997 678

139

Retroposon (SVA_F)

1

CP068269.2:105 092 050

53

SINE (AluSx4)

1

CP068269.2:109 968 532

39

Retroposon (SVA_F)

1

CP068269.2:112 443 781

81

SINE (AluSz)

1

CP068269.2:119 632 661

61

SINE (AluYa5)

1

CP068269.2:119 842 404

313

SINE (AluYk2)

1

CP068269.2:121 668 497

307

SINE (AluYa5)

1

CP068269.2:138 384 259

298

LINE (L1M4)

1

CP068269.2:138 516 231

39

SINE (AluSp)

1

CP068268.2:3 057 186

34

SINE (AluYh3)

1

CP068268.2:3 530 702

315

SINE (AluYg6)

1

CP068268.2:14 455 848

327

SINE (AluYa5)

1

CP068268.2:19 127 408

330

SINE (AluY)

1

CP068268.2:21 756 234

34

SINE (AluJb)

1

CP068268.2:23 506 880

330

SINE (AluYb8)

1

CP068268.2:26 090 723

315

SINE (AluY)

1

CP068268.2:26 098 120

45

SINE (Alu)

1

CP068268.2:27 385 781

391

LINE (L1PA7)

1

CP068268.2:29 201 484

188

LTR (MLT1F-int)

1

CP068268.2:30 638 183

126

SINE (AluSx)

1

CP068268.2:46 272 906

39

Retroposon (SVA_C)

1

CP068268.2:52 951 752

275

SINE (AluYk2)

1

CP068268.2:70 106 724

315

SINE (AluYb8)

1

CP068268.2:71 500 997

80

Retroposon (SVA_A)

1

CP068268.2:72 746 653

48

Retroposon (SVA_F)

1

CP068268.2:80 805 468

154

SINE (AluYk2)

1

CP068268.2:88 539 556

142

SINE (AluYa5)

1

CP068268.2:97 658 629

311

SINE (AluYa5)

1

CP068268.2:97 822 182

48

Retroposon (SVA_F)

1

CP068268.2:102 861 010

320

SINE (AluYa5)

1

CP068268.2:102 921 189

141

Retroposon (SVA_F)

1

CP068268.2:107 018 352

142

SINE (AluJb)

1

CP068268.2:108 118 466

320

SINE (AluYa5)

1

CP068268.2:115 681 774

49

Retroposon (SVA_F)

1

CP068268.2:116 480 342

28

LINE (L1P1)

1

CP068268.2:120 078 060

39

Retroposon (SVA_C)

1

CP068268.2:131 025 575

97

LINE (L1PA7)

1

CP068267.2:4 244 313

47

LINE (L1M2)

1

CP068267.2:4 348 569

156

Retroposon (SVA_B)

1

CP068267.2:8 949 899

318

SINE (AluYk2)

1

CP068267.2:22 361 771

124

LINE (L1PA16)

1

CP068267.2:22 533 230

115

LINE (L1M2)

1

CP068267.2:23 457 692

313

SINE (AluYa5)

1

CP068267.2:25 682 675

345

SINE (AluYa5)

1

CP068267.2:27 776 457

331

LTR (MER61E)

1

CP068267.2:31 266 980

316

SINE (AluYb8)

1

CP068267.2:47 253 984

175

Retroposon (SVA_F)

1

CP068267.2:48 903 168

348

LINE (L1HS)

1

CP068267.2:55 491 270

337

SINE (AluY)

1

CP068267.2:56 473 791

316

SINE (AluYg6)

1

CP068267.2:57 894 100

117

Retroposon (SVA_B)

1

CP068267.2:57 956 966

131

SINE (AluYa5)

1

CP068267.2:58 403 047

326

SINE (AluYb8)

1

CP068267.2:75 339 542

77

Retroposon (SVA_F)

1

CP068267.2:79 061 406

55

LTR (ERVL-B4-int)

1

CP068267.2:80 466 705

125

LTR (LTR12D)

1

CP068267.2:82 117 603

40

Retroposon (SVA_C)

1

CP068267.2:83 069 825

39

Retroposon (SVA_B)

1

CP068267.2:95 142 638

41

SINE (Alu)

1

CP068267.2:96 505 968

312

SINE (AluYk3)

1

CP068267.2:96 512 808

42

LTR (LTR46)

1

CP068267.2:110 116 232

326

SINE (AluY)

1

CP068267.2:118 715 549

133

SINE (AluSx)

1

CP068267.2:130 127 238

452

Retroposon (SVA_E)

1

CP068266.2:3 101 640

128

Retroposon (SVA_F)

1

CP068266.2:6 807 792

255

SINE (AluYk2)

1

CP068266.2:8 198 775

48

Retroposon (SVA_F)

1

CP068266.2:8 608 368

115

Retroposon (SVA_A)

1

CP068266.2:8 608 846

47

Retroposon (SVA_F)

1

CP068266.2:25 181 210

328

SINE (AluY)

1

CP068266.2:29 284 322

34

LINE (L1P1)

1

CP068266.2:30 029 848

200

SINE (AluYa5)

1

CP068266.2:30 090 243

425

DNA (Tigger3b)

1

CP068266.2:38 940 562

338

LINE (L1P1)

1

CP068266.2:41 239 964

344

LINE (L1P3)

1

CP068266.2:41 631 622

38

LINE (L1P1)

1

CP068266.2:43 644 100

126

Retroposon (SVA_F)

1

CP068266.2:44 984 370

310

SINE (AluYa5)

1

CP068266.2:48 293 796

97

Retroposon (SVA_F)

1

CP068266.2:48 294 127

36

Retroposon (SVA_F)

1

CP068266.2:54 455 313

39

Retroposon (SVA_D)

1

CP068266.2:57 624 597

41

LTR (LTR12C)

1

CP068266.2:57 657 848

313

SINE (AluYa5)

1

CP068266.2:58 805 540

321

SINE (AluYb8)

1

CP068266.2:60 632 641

282

SINE (AluYb8)

1

CP068266.2:70 181 568

46

Retroposon (SVA_F)

1

CP068266.2:71 354 899

23

LTR (LTR12E)

1

CP068266.2:77 071 800

174

LINE (L1P1)

1

CP068266.2:86 830 416

145

SINE (AluSx)

1

CP068266.2:87 458 390

319

SINE (AluY)

1

CP068266.2:93 946 035

316

SINE (AluY)

1

CP068266.2:94 256 702

320

SINE (AluYa5)

1

CP068266.2:96 952 164

313

SINE (AluYa5)

1

CP068266.2:97 074 951

330

SINE (AluYb8)

1

CP068266.2:101 881 504

101

SINE (AluYb8)

1

CP068266.2:104 285 274

50

Retroposon (SVA_F)

1

CP068266.2:104 884 820

187

SINE (AluYb9)

1

CP068266.2:121 990 164

462

Retroposon (SVA_F)

1

CP068266.2:124 855 294

309

SINE (AluJb)

1

CP068266.2:126 723 341

319

SINE (AluYb8)

1

CP068266.2:129 049 321

78

LTR (LTR1C3)

1

CP068265.2:13 715 682

197

SINE (AluYb8)

1

CP068265.2:17 820 623

288

SINE (AluYb8)

1

CP068265.2:19 743 748

50

LTR (LTR3B_v)

1

CP068265.2:20 808 668

316

SINE (AluYa5)

1

CP068265.2:21 153 369

313

SINE (AluYa5)

1

CP068265.2:24 474 413

135

SINE (AluYa5)

1

CP068265.2:28 214 233

66

LTR (LTR12)

1

CP068265.2:29 823 844

319

SINE (AluYa5)

1

CP068265.2:36 827 231

337

SINE (AluYb9)

1

CP068265.2:45 778 723

328

SINE (AluYa5)

1

CP068265.2:49 104 639

47

LINE (L1PA10)

1

CP068265.2:51 294 855

39

Retroposon (SVA_A)

1

CP068265.2:56 231 795

119

SINE (AluY)

1

CP068265.2:57 263 121

290

SINE (AluYb9)

1

CP068265.2:59 936 546

390

LINE (L1HS)

1

CP068265.2:62 171 725

328

SINE (AluYa5)

1

CP068265.2:68 684 135

328

SINE (AluYa5)

1

CP068265.2:77 302 799

313

SINE (AluYa5)

1

CP068265.2:81 838 300

307

SINE (AluYa5)

1

CP068265.2:85 705 616

305

SINE (AluYa5)

1

CP068265.2:85 943 033

291

SINE (AluYa5)

1

CP068265.2:88 073 850

315

SINE (AluYa5)

1

CP068265.2:93 800 756

144

SINE (AluYa5)

1

CP068265.2:98 181 349

135

SINE (AluYk2)

1

CP068265.2:107 293 494

316

SINE (AluYb8)

1

CP068265.2:109 388 985

315

SINE (AluYb8)

1

CP068265.2:109 862 682

128

LTR (LTR12C)

1

CP068265.2:109 863 304

40

LTR (LTR12E)

1

CP068265.2:110 705 076

70

SINE (Alu)

1

CP068264.2:4 080 751

328

SINE (AluYb8)

1

CP068264.2:4 176 442

306

SINE (AluYa5)

1

CP068264.2:8 666 687

179

SINE (AluYb8)

1

CP068264.2:8 922 130

78

LINE (L1P1)

1

CP068264.2:9 347 163

85

LINE (L1P1)

1

CP068264.2:17 906 483

330

SINE (AluY)

1

CP068264.2:22 030 072

439

LINE (L1HS)

1

CP068264.2:24 287 282

97

LINE (L1M1)

1

CP068264.2:28 277 165

36

Retroposon (SVA_D)

1

CP068264.2:28 610 960

298

SINE (AluYa5)

1

CP068264.2:28 682 029

316

SINE (AluY)

1

CP068264.2:29 128 780

87

SINE (AluJo)

1

CP068264.2:29 131 238

312

SINE (AluY)

1

CP068264.2:31 745 103

39

Retroposon (SVA_C)

1

CP068264.2:37 792 967

513

LINE (L1P1)

1

CP068264.2:38 736 235

310

SINE (AluYa5)

1

CP068264.2:45 171 772

326

SINE (AluYb8)

1

CP068264.2:67 754 433

185

SINE (AluYe5)

1

CP068264.2:76 765 409

281

SINE (AluYa5)

1

CP068264.2:80 383 842

314

SINE (AluY)

1

CP068264.2:92 910 435

53

SINE (Alu)

1

CP068263.2:18 206 744

28

DNA (Tigger3c)

1

CP068263.2:20 376 616

44

SINE (Alu)

1

CP068263.2:21 696 325

308

SINE (AluYa5)

1

CP068263.2:33 461 719

125

Retroposon (SVA_F)

1

CP068263.2:38 489 396

36

Retroposon (SVA_F)

1

CP068263.2:64 197 247

323

SINE (AluYb9)

1

CP068263.2:65 174 494

318

SINE (AluYa5)

1

CP068263.2:67 062 769

57

SINE (Alu)

1

CP068263.2:77 681 654

287

SINE (AluSx)

1

CP068263.2:80 969 475

321

SINE (AluYa5)

1

CP068263.2:83 433 722

325

SINE (AluYk2)

1

CP068263.2:93 349 076

291

SINE (AluYa5)

1

CP068262.2:480 325

310

SINE (AluSx)

1

CP068262.2:832 869

330

SINE (AluY)

1

CP068262.2:3 038 242

110

SINE (AluSx3)

1

CP068262.2:4 839 788

41

SINE (Alu)

1

CP068262.2:5 324 682

319

SINE (AluYa5)

1

CP068262.2:15 116 749

85

SINE (AluSc)

1

CP068262.2:31 491 932

465

Retroposon (SVA_F)

1

CP068262.2:62 994 200

43

SINE (AluJb)

1

CP068262.2:63 015 018

318

SINE (AluYa5)

1

CP068262.2:64 052 598

321

SINE (AluYa5)

1

CP068262.2:64 555 274

134

SINE (AluSz)

1

CP068262.2:64 559 334

56

SINE (AluSx3)

1

CP068262.2:68 772 351

63

LTR (HERVH-int)

1

CP068262.2:88 229 528

36

DNA (Tigger3c)

1

CP068261.2:4 300 934

259

LINE (L1HS)

1

CP068261.2:16 232 917

317

SINE (AluYe5)

1

CP068261.2:36 143 032

46

Retroposon (SVA_F)

1

CP068261.2:38 008 692

192

SINE (AluYc)

1

CP068261.2:47 114 918

39

Retroposon (SVA_D)

1

CP068261.2:47 115 270

39

Retroposon (SVA_C)

1

CP068261.2:49 989 179

224

Retroposon (SVA_F)

1

CP068261.2:53 188 839

321

SINE (AluYa5)

1

CP068261.2:53 829 064

311

SINE (AluYa5)

1

CP068261.2:61 421 223

48

Retroposon (SVA_F)

1

CP068261.2:68 170 924

159

LTR (LTR12C)

1

CP068261.2:73 573 179

318

SINE (AluYa5)

1

CP068261.2:75 907 696

47

SINE (AluJr4)

1

CP068261.2:75 935 935

316

SINE (AluYb8)

1

CP068261.2:78 886 239

313

SINE (AluYg6)

1

CP068260.2:3 032 121

146

SINE (AluYe5)

1

CP068260.2:8 797 339

112

SINE (AluJo)

1

CP068260.2:9 045 402

41

LTR (HERVIP10F-int)

1

CP068260.2:9 097 966

101

LTR (LTR12C)

1

CP068260.2:9 388 660

334

SINE (AluJb)

1

CP068260.2:14 173 524

36

Retroposon (SVA_F)

1

CP068260.2:22 276 125

316

SINE (AluYb8)

1

CP068260.2:35 273 621

317

SINE (AluYa5)

1

CP068260.2:45 956 220

80

SINE (AluSq)

1

CP068260.2:53 996 308

73

LINE (L1PBa)

1

CP068260.2:54 439 434

167

LINE (L1HS)

1

CP068260.2:57 843 464

383

LTR (LTR12C)

1

CP068260.2:61 819 865

232

SINE (AluYa5)

1

CP068260.2:63 221 681

321

SINE (AluY)

1

CP068260.2:66 072 639

338

SINE (AluYa5)

1

CP068260.2:68 770 940

323

SINE (AluYb9)

1

CP068260.2:77 079 849

311

SINE (AluYk2)

1

CP068259.2:646 264

72

SINE (AluSp)

1

CP068259.2:6 913 159

323

SINE (AluYb8)

1

CP068259.2:12 746 120

175

Retroposon (SVA_F)

1

CP068259.2:13 829 910

126

Retroposon (SVA_F)

1

CP068259.2:16 391 116

140

SINE (AluJb)

1

CP068259.2:17 856 398

164

SINE (AluSx4)

1

CP068259.2:18 265 771

319

SINE (AluSx)

1

CP068259.2:23 988 183

49

Retroposon (SVA_F)

1

CP068259.2:24 393 776

69

LTR (MER11B)

1

CP068259.2:36 653 353

143

Retroposon (SVA_F)

1

CP068259.2:40 925 916

77

Retroposon (SVA_F)

1

CP068259.2:53 674 286

100

SINE (AluJb)

1

CP068259.2:54 049 533

135

SINE (AluSx)

1

CP068259.2:56 390 789

85

SINE (AluYa5)

1

CP068259.2:56 876 654

35

SINE (Alu)

1

CP068259.2:59 694 584

318

SINE (AluYb8)

1

CP068258.2:996 590

102

LINE (L2a)

1

CP068258.2:3 049 605

47

Retroposon (SVA_F)

1

CP068258.2:5 079 951

283

SINE (AluY)

1

CP068258.2:5 422 563

49

LTR (MSTB)

1

CP068258.2:5 544 074

305

SINE (AluYc)

1

CP068258.2:5 544 134

290

SINE (AluYc)

1

CP068258.2:37 925 585

291

SINE (AluSx)

1

CP068258.2:52 135 817

36

SINE (Alu)

1

CP068258.2:53 725 240

316

SINE (AluYa5)

1

CP068258.2:62 091 491

125

SINE (AluSc)

1

CP068258.2:63 187 710

320

SINE (AluYb8)

1

CP068257.2:22 749 626

325

SINE (AluYb8)

1

CP068257.2:42 828 950

134

SINE (AluSz)

1

CP068256.2:18 235 398

357

SINE (AluYb8)

1

CP068256.2:31 488 198

334

SINE (AluY)

1

CP068256.2:32 276 538

316

SINE (AluY)

1

CP068256.2:32 611 946

99

LTR (MER11C)

1

CP068255.2:295 081

165

SINE (AluSx)

1

CP068255.2:3 778 904

57

LINE (L1PB1)

1

CP068255.2:14 286 653

46

DNA (MER5B)

1

CP068255.2:24 293 369

129

Retroposon (SVA_F)

1

CP068255.2:25 517 581

334

SINE (AluYb8)

1

CP068255.2:27 034 647

90

LTR (MER61C)

1

CP068255.2:28 925 984

49

Retroposon (SVA_F)

1

CP068255.2:45 683 112

125

Retroposon (SVA_F)

1

CP068255.2:52 216 963

324

SINE (AluYb8)

1

CP068255.2:83 656 505

86

LINE (L1MC5)

1

CP068255.2:89 731 271

242

SINE (AluYa5)

1

CP068255.2:135 308 659

303

Retroposon (SVA_F)

1

CP068255.2:135 308 739

304

Retroposon (SVA_F)

1

CP068255.2:136 580 332

51

LTR (LTR7)

1

CP068255.2:151 099 729

315

SINE (AluY)

1

CP086569.2:306 952

165

SINE (AluSx)

1

CP086569.2:736 248

133

SINE (AluJb)

1

CP086569.2:1 168 077

333

SINE (AluSx)

1


  • 1 962 TE insertions were found with an AF ≥ 0.5.
A Manhattan plot of AFs is shown below.
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

A) Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat
family

Repeat
subfamily

Unique

Total
(lax)

Total
(strict)

DNA

hAT

6

12

10

TcMar

6

12

11

LINE

L1

101

200

199

L2

3

6

6

LTR

ERV1

31

59

58

ERVK

5

8

8

ERVL

10

20

20

Retroposon

SVA

127

246

234

SINE

Alu

787

1 570

1 566

MIR

1

2

2

Total

-

1 077

2 135

2 114

2.1 Class I Elements

2.1.1 Distribution

A) Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name

Unique

Total
(lax)

Total
(strict)

SVA A

12

24

20

SVA B

2

4

4

SVA C

4

7

7

SVA D

4

8

8

SVA E

17

33

33

SVA F

86

166

158

SVA F1

2

4

4

Total

127

246

234

Click to show table with Alu counts by name.
Count of _Alu_ elements by name

Name

Unique

Total
(lax)

Total
(strict)

Alu

2

4

4

AluJb

16

31

31

AluJo

4

8

7

AluJr4

1

2

2

AluSc

3

6

6

AluSc8

3

6

6

AluSg

10

20

20

AluSg4

2

4

3

AluSp

5

10

10

AluSq

4

8

8

AluSx

33

65

65

AluSx3

3

6

6

AluSx4

3

6

6

AluSz

5

10

9

AluSz6

3

6

6

AluY

152

303

302

AluYa5

253

505

505

AluYa8

7

14

14

AluYb8

146

292

292

AluYb9

24

48

48

AluYc

14

28

28

AluYd8

3

6

6

AluYe5

20

40

40

AluYf1

1

2

2

AluYg6

16

32

32

AluYh7

4

8

8

AluYi6

4

8

8

AluYj4

2

4

4

AluYk11

3

6

6

AluYk12

3

6

6

AluYk2

28

56

56

AluYk3

5

10

10

AluYk4

1

2

2

FLAM C

2

4

4

FRAM

2

4

4

Total

787

1 570

1 566

Click to show table with L1 counts by name.
Count of L1 elements by name

Name

Unique

Total
(lax)

Total
(strict)

L1HS

51

101

100

L1M

1

2

2

L1M2

3

6

6

L1M3

1

2

2

L1M3b

1

2

2

L1M4

1

2

2

L1M5

2

3

3

L1MA5

1

2

2

L1MA7

1

2

2

L1MB8

1

2

2

L1MC

2

4

4

L1MC3

1

2

2

L1MC4

1

2

2

L1MC5

1

2

2

L1MEc

1

2

2

L1P1

5

10

10

L1P2

2

4

4

L1P3

4

8

8

L1P3b

1

2

2

L1P4

1

2

2

L1PA10

1

2

2

L1PA11

1

2

2

L1PA12

1

2

2

L1PA13

1

2

2

L1PA16

2

4

4

L1PA2

4

8

8

L1PA3

1

2

2

L1PA7

1

2

2

L1PB

2

4

4

L1PB1

1

2

2

L1PBa

1

2

2

L1PBa1

2

4

4

L1PBb

1

2

2

Total

101

200

199

2.1.2 Class II TEs on gene sequences

Click to show table with 1069 rows.

Position

Length

Type

Gene

Annotation

Occurrences

CP068255.2:5 749 733

113

SINE (Alu)

NLGN4X

Intron

2

CP068255.2:7 494 814

158

SINE (Alu)

LOC107985675

Intron

2

CP068255.2:9 615 362

270

SINE (Alu)

WWC3

Intron

2

CP068255.2:18 657 080

54

SINE (Alu)

ADGRG2

Intron

2

CP068255.2:22 237 816

314

SINE (Alu)

PTCHD1-AS

Intron

2

CP068255.2:24 293 369

129

Retroposon (SVA)

POLA1

Intron

2

CP068255.2:28 925 984

49

Retroposon (SVA)

IL1RAPL1

Intron

2

CP068255.2:32 788 943

323

SINE (Alu)

DMD

Intron

2

CP068255.2:39 481 305

337

SINE (Alu)

BCOR

Intron

2

CP068255.2:83 656 505

86

LINE (L1)

SATL1

Intron

2

CP068255.2:83 683 173

323

SINE (Alu)

ZNF711

Intron

2

CP068255.2:84 713 986

317

SINE (Alu)

DACH2

Intron

2

CP068255.2:90 623 038

135

SINE (Alu)

PCDH11X

Intron

2

CP068255.2:97 133 746

70

LINE (L1)

LINC03077

Intron

2

CP068255.2:100 344 903

51

LINE (L1)

ZMAT1

Intron

2

CP068255.2:102 352 991

329

SINE (Alu)

TMSB15B-AS1

Intron

2

CP068255.2:103 670 854

148

LTR (ERV1)

IL1RAPL2

Intron

2

CP068255.2:110 764 583

6 057

LINE (L1)

RTL4

Intron

2

CP068255.2:130 112 151

310

SINE (Alu)

FIRRE

Intron

2

CP068255.2:151 099 729

315

SINE (Alu)

NSDHL

Intron

2

CP068255.2:247 908

165

SINE (Alu)

LOC102724521

Intron

1

CP068255.2:295 081

165

SINE (Alu)

LOC102724521

Intron

2

CP068256.2:7 583 739

317

SINE (Alu)

LOC128966699

Promoter

2

CP068256.2:18 235 398

357

SINE (Alu)

SLC25A18

Intron

2

CP068256.2:18 700 162

324

SINE (Alu)

LINC01634

Promoter

2

CP068256.2:24 409 922

308

SINE (Alu)

GSTT4

Intron

2

CP068256.2:25 461 789

295

SINE (Alu)

KIAA1671

Intron

2

CP068256.2:25 532 879

97

SINE (Alu)

KIAA1671

Intron

2

CP068256.2:27 234 737

2 644

Retroposon (SVA)

MIATNB

Intron

2

CP068256.2:29 242 941

313

SINE (Alu)

CCDC117

Intron

2

CP068256.2:30 535 147

329

SINE (Alu)

HORMAD2-AS1

Intron

2

CP068256.2:32 056 335

298

Retroposon (SVA)

SFI1

Intron

1

CP068256.2:32 276 538

316

SINE (Alu)

DEPDC5

Intron

2

CP068256.2:32 887 860

292

SINE (Alu)

BPIFC

Intron

2

CP068256.2:32 895 332

328

SINE (Alu)

BPIFC

Intron

2

CP068256.2:34 131 369

121

SINE (Alu)

LARGE1

Intron

2

CP068256.2:34 820 706

63

SINE (Alu)

LOC105373012

Promoter

2

CP068256.2:41 793 756

314

SINE (Alu)

ZC3H7B

Intron

2

CP068256.2:42 223 412

317

SINE (Alu)

MEI1

Intron

2

CP068256.2:42 592 175

59

LTR (ERV1)

NDUFA6-DT

Intron

1

CP068256.2:43 299 732

314

SINE (Alu)

ARFGAP3

Intron

2

CP068256.2:43 654 158

327

SINE (Alu)

TTLL12

Intron

2

CP068256.2:44 411 840

1 147

LINE (L1)

PNPLA3

Intron

1

CP068257.2:12 279 102

188

Retroposon (SVA)

LOC110091776

Promoter

2

CP068257.2:13 911 959

387

LINE (L1)

LOC105369302

Intron

2

CP068257.2:15 595 054

1 308

LINE (L1)

LOC107985511

Intron

2

CP068257.2:19 777 205

347

LTR (ERVL)

NCAM2

Intron

2

CP068257.2:21 725 994

324

SINE (Alu)

D21S2088E

Intron

2

CP068257.2:25 235 329

330

SINE (Alu)

LOC105372760

Intron

2

CP068257.2:27 546 510

353

SINE (Alu)

LOC105372767

Intron

2

CP068257.2:27 595 748

333

SINE (Alu)

LINC00189

Intron

2

CP068257.2:34 874 715

322

SINE (Alu)

CLDN14-AS1

Intron

2

CP068257.2:36 014 613

323

SINE (Alu)

KCNJ6-AS1

Intron

2

CP068257.2:38 974 146

117

SINE (Alu)

DSCAM

Intron

2

CP068257.2:39 632 883

50

LTR (ERV1)

BACE2

Intron

2

CP068257.2:41 166 978

96

Retroposon (SVA)

LINC01668

Intron

2

CP068258.2:1 615 940

575

LTR (ERV1)

SIRPB1

Intron

2

CP068258.2:3 292 706

311

SINE (Alu)

DNAAF9

Intron

2

CP068258.2:9 684 360

118

LTR (ERV1)

PAK5

Intron

2

CP068258.2:15 176 135

291

SINE (Alu)

MACROD2

Intron

2

CP068258.2:16 549 972

324

LINE (L1)

KIF16B

Intron

2

CP068258.2:20 169 566

326

SINE (Alu)

CFAP61

Intron

2

CP068258.2:21 237 844

1 437

LINE (L1)

KIZ

Intron

2

CP068258.2:25 627 216

443

Retroposon (SVA)

NINL

Intron

2

CP068258.2:30 450 663

321

SINE (Alu)

FAM242A

Intron

2

CP068258.2:36 934 692

183

SINE (Alu)

PROCR

Intron

2

CP068258.2:37 082 086

301

SINE (Alu)

UQCC1

Intron

2

CP068258.2:37 591 607

323

SINE (Alu)

PHF20

Intron

2

CP068258.2:37 925 585

291

SINE (Alu)

EPB41L1

Intron

2

CP068258.2:38 114 785

94

SINE (Alu)

DLGAP4

Intron

2

CP068258.2:38 911 585

311

SINE (Alu)

RPN2

Intron

2

CP068258.2:50 455 768

193

SINE (Alu)

PREX1

Intron

2

CP068258.2:62 091 491

125

SINE (Alu)

MIR646HG

Intron

2

CP068258.2:63 187 710

320

SINE (Alu)

CDH4

Intron

2

CP068258.2:65 692 890

325

SINE (Alu)

TPD52L2

Intron

2

CP068259.2:2 535 989

124

SINE (Alu)

GNG7

Intron

2

CP068259.2:3 262 717

319

SINE (Alu)

CELF5

Intron

2

CP068259.2:5 844 818

69

LTR (ERV1)

FUT3

Promoter

2

CP068259.2:5 844 818

69

LTR (ERV1)

LOC101928844

Intron

2

CP068259.2:6 141 005

266

SINE (Alu)

ACSBG2

Intron

2

CP068259.2:6 151 665

291

SINE (Alu)

ACSBG2

Intron

2

CP068259.2:6 344 283

75

Retroposon (SVA)

ACER1

Intron

2

CP068259.2:6 913 159

323

SINE (Alu)

ADGRE1

Intron

2

CP068259.2:10 463 384

310

SINE (Alu)

ICAM3

Intron

2

CP068259.2:12 746 120

175

Retroposon (SVA)

ZNF791

Intron

2

CP068259.2:13 829 910

126

Retroposon (SVA)

LOC105372284

Intron

2

CP068259.2:16 013 804

117

LINE (L1)

CYP4F2

Intron

2

CP068259.2:17 856 398

164

SINE (Alu)

MAP1S

Intron

2

CP068259.2:18 265 771

319

SINE (Alu)

MAST3

Intron

2

CP068259.2:21 703 198

265

SINE (Alu)

LOC124904670

Intron

2

CP068259.2:21 715 981

319

SINE (Alu)

LOC101929007

Intron

2

CP068259.2:21 716 141

146

SINE (Alu)

LOC101929007

Intron

2

CP068259.2:21 722 228

301

SINE (Alu)

LOC101929007

Intron

1

CP068259.2:23 273 105

316

SINE (Alu)

ZNF730

Intron

2

CP068259.2:23 988 183

49

Retroposon (SVA)

RPSA2

Intron

2

CP068259.2:38 451 416

317

SINE (Alu)

TYROBP

Intron

2

CP068259.2:40 925 916

77

Retroposon (SVA)

SIPA1L3

Intron

2

CP068259.2:41 072 000

114

SINE (Alu)

SPINT2

Intron

2

CP068259.2:41 343 628

134

SINE (Alu)

RYR1

Intron

2

CP068259.2:47 849 106

92

SINE (Alu)

RELB

Intron

2

CP068259.2:54 049 533

135

SINE (Alu)

LOC105372442

Intron

2

CP068259.2:54 361 759

310

SINE (Alu)

LINC01872

Intron

2

CP068259.2:55 530 373

105

LINE (L1)

ZNF534

Intron

2

CP068259.2:55 665 437

135

SINE (Alu)

ZNF701

Intron

2

CP068259.2:55 896 337

126

Retroposon (SVA)

ZNF600

Intron

2

CP068259.2:56 195 815

316

SINE (Alu)

ZNF415

Intron

2

CP068259.2:59 549 110

316

SINE (Alu)

ZNF667

Intron

2

CP068259.2:59 694 584

318

SINE (Alu)

ZNF71

Intron

2

CP068259.2:61 203 202

329

SINE (Alu)

ZSCAN18

Intron

2

CP068259.2:61 501 633

175

Retroposon (SVA)

ZNF584

Intron

2

CP068259.2:646 264

72

SINE (Alu)

PRSS57

Intron

2

CP068259.2:773 676

311

SINE (Alu)

PLPPR3

Intron

2

CP068260.2:3 032 121

146

SINE (Alu)

EMILIN2

Intron

2

CP068260.2:8 797 339

112

SINE (Alu)

RAB12

Intron

2

CP068260.2:9 388 660

334

SINE (Alu)

ANKRD12

Intron

2

CP068260.2:11 073 229

315

SINE (Alu)

PIEZO2

Intron

2

CP068260.2:12 778 756

330

SINE (Alu)

SPIRE1

Intron

2

CP068260.2:22 171 533

321

SINE (Alu)

LINC01900

Intron

2

CP068260.2:27 152 079

318

SINE (Alu)

CHST9

Intron

2

CP068260.2:35 273 621

317

SINE (Alu)

MAPRE2

Intron

2

CP068260.2:45 956 220

80

SINE (Alu)

LOC105372093

Intron

2

CP068260.2:48 538 401

57

SINE (Alu)

LOC124904352

Intron

2

CP068260.2:52 608 255

324

SINE (Alu)

DCC

Intron

2

CP068260.2:53 663 279

322

SINE (Alu)

DCC

Intron

2

CP068260.2:55 681 933

318

SINE (Alu)

MIR4529

Promoter

2

CP068260.2:55 681 933

318

SINE (Alu)

TCF4-AS1

Intron

2

CP068260.2:56 003 038

317

SINE (Alu)

LOC105372130

Intron

2

CP068260.2:56 891 790

330

SINE (Alu)

WDR7

Intron

2

CP068260.2:57 914 128

143

SINE (Alu)

ATP8B1

Intron

2

CP068260.2:59 685 435

313

SINE (Alu)

CCBE1

Intron

2

CP068260.2:66 072 639

338

SINE (Alu)

CDH7

Intron

2

CP068260.2:70 644 924

312

SINE (Alu)

RPS2P6

Promoter

2

CP068260.2:70 644 924

312

SINE (Alu)

LOC124908034

Intron

2

CP068260.2:71 698 063

54

LINE (L1)

LOC107985179

Intron

2

CP068260.2:73 827 616

320

SINE (Alu)

LOC105372190

Intron

2

CP068260.2:77 079 849

311

SINE (Alu)

ZNF236

Promoter

2

CP068260.2:77 079 849

311

SINE (Alu)

ZNF236

Intron

2

CP068260.2:77 259 074

126

Retroposon (SVA)

MBP

Intron

2

CP068260.2:77 275 276

317

SINE (Alu)

MBP

Intron

2

CP068260.2:544 914

327

SINE (Alu)

LOC107985155

Intron

2

CP068261.2:2 178 843

134

SINE (Alu)

SMG6

Intron

2

CP068261.2:4 021 910

134

SINE (Alu)

ZZEF1

Intron

2

CP068261.2:5 409 832

324

SINE (Alu)

NLRP1

Intron

2

CP068261.2:6 338 036

119

LINE (L1)

LOC107985017

Intron

2

CP068261.2:9 176 006

134

SINE (Alu)

STX8

Intron

2

CP068261.2:10 082 999

317

SINE (Alu)

GAS7

Intron

2

CP068261.2:11 562 452

329

SINE (Alu)

DNAH9

Intron

2

CP068261.2:13 440 691

296

SINE (Alu)

HS3ST3A1

Intron

2

CP068261.2:13 709 042

285

SINE (Alu)

LOC100506974

Intron

2

CP068261.2:16 232 917

317

SINE (Alu)

PIGL

Intron

2

CP068261.2:16 533 126

1 318

Retroposon (SVA)

ZNF624

Intron

2

CP068261.2:18 021 722

309

SINE (Alu)

TUBB8P11

Intron

2

CP068261.2:18 680 625

315

SINE (Alu)

TRIM16L

Intron

2

CP068261.2:20 506 861

152

SINE (Alu)

LGALS9B

Intron

2

CP068261.2:31 681 321

760

Retroposon (SVA)

SUZ12P1

Intron

2

CP068261.2:32 278 209

349

LINE (L1)

NF1

Intron

2

CP068261.2:33 256 488

169

SINE (Alu)

RHBDL3

Intron

2

CP068261.2:33 264 228

185

SINE (Alu)

RHBDL3

Intron

2

CP068261.2:38 008 692

192

SINE (Alu)

AATF

Intron

2

CP068261.2:39 457 705

318

SINE (Alu)

SRCIN1

Intron

2

CP068261.2:41 050 467

310

SINE (Alu)

RAPGEFL1

Intron

2

CP068261.2:49 291 096

323

SINE (Alu)

SKAP1

Intron

2

CP068261.2:49 989 179

224

Retroposon (SVA)

B4GALNT2

Intron

2

CP068261.2:61 447 465

325

SINE (Alu)

LINC01999

Intron

2

CP068261.2:62 777 760

311

SINE (Alu)

INTS2

Intron

2

CP068261.2:69 968 391

311

SINE (Alu)

ABCA6

Intron

2

CP068261.2:73 573 179

318

SINE (Alu)

SLC39A11

Intron

2

CP068261.2:75 935 935

316

SINE (Alu)

KCTD2

Intron

2

CP068261.2:78 886 239

313

SINE (Alu)

TNRC6C

Intron

2

CP068261.2:79 403 508

181

SINE (Alu)

DNAH17

Intron

2

CP068261.2:82 055 352

326

SINE (Alu)

AATK

Intron

2

CP068261.2:82 527 912

321

SINE (Alu)

NPLOC4

Promoter

2

CP068261.2:82 527 912

321

SINE (Alu)

NPLOC4

Intron

2

CP068261.2:455 386

97

Retroposon (SVA)

VPS53

Intron

2

CP068262.2:4 788 797

329

SINE (Alu)

ZNF500

Intron

2

CP068262.2:5 324 682

319

SINE (Alu)

RBFOX1

Intron

2

CP068262.2:6 773 894

1 436

LINE (L1)

RBFOX1

Intron

2

CP068262.2:6 869 242

326

SINE (Alu)

RBFOX1

Intron

2

CP068262.2:7 207 291

324

SINE (Alu)

RBFOX1

Intron

2

CP068262.2:11 372 328

118

Retroposon (SVA)

LOC105371082

Intron

2

CP068262.2:11 372 371

294

Retroposon (SVA)

LOC105371082

Intron

2

CP068262.2:15 116 749

85

SINE (Alu)

PDXDC1

Intron

2

CP068262.2:15 403 897

313

SINE (Alu)

MPV17L

Intron

2

CP068262.2:19 149 959

344

SINE (Alu)

SYT17

Intron

2

CP068262.2:19 426 191

323

SINE (Alu)

TMC5

Intron

2

CP068262.2:19 437 051

318

SINE (Alu)

GDE1

Intron

2

CP068262.2:22 425 396

311

SINE (Alu)

LOC105371126

Intron

2

CP068262.2:23 793 318

312

SINE (Alu)

GGA2

Intron

2

CP068262.2:24 129 334

324

SINE (Alu)

PRKCB

Intron

2

CP068262.2:63 015 018

318

SINE (Alu)

RSPRY1

Intron

2

CP068262.2:64 052 598

321

SINE (Alu)

CFAP263

Intron

2

CP068262.2:64 555 274

134

SINE (Alu)

LOC107984867

Intron

1

CP068262.2:64 559 334

56

SINE (Alu)

LOC107984867

Intron

2

CP068262.2:65 734 387

319

SINE (Alu)

LINC02141

Intron

2

CP068262.2:65 799 060

320

SINE (Alu)

LINC02141

Intron

2

CP068262.2:67 801 060

330

SINE (Alu)

CDH8

Intron

2

CP068262.2:75 622 947

53

SINE (Alu)

WWP2

Intron

2

CP068262.2:83 252 469

314

SINE (Alu)

MON1B

Intron

2

CP068262.2:83 862 431

134

SINE (Alu)

VAT1L

Intron

2

CP068262.2:84 715 226

323

SINE (Alu)

WWOX

Intron

2

CP068262.2:86 496 713

321

SINE (Alu)

DYNLRB2-AS1

Intron

2

CP068262.2:86 724 756

326

SINE (Alu)

CDYL2

Intron

2

CP068262.2:87 305 197

311

SINE (Alu)

BCO1

Intron

2

CP068262.2:88 943 271

321

SINE (Alu)

CDH13

Intron

2

CP068262.2:91 141 715

330

SINE (Alu)

KIAA0513

Intron

2

CP068262.2:94 530 929

334

SINE (Alu)

ZFPM1

Intron

2

CP068262.2:449 468

320

SINE (Alu)

RAB11FIP3

Intron

1

CP068262.2:480 325

310

SINE (Alu)

RAB11FIP3

Intron

2

CP068263.2:20 002 339

330

SINE (Alu)

LOC124907500

Intron

2

CP068263.2:20 256 381

135

SINE (Alu)

HERC2P2

Intron

2

CP068263.2:21 696 325

308

SINE (Alu)

LOC107984787

Intron

2

CP068263.2:33 461 719

125

Retroposon (SVA)

DPH6-DT

Intron

2

CP068263.2:33 609 416

309

SINE (Alu)

DPH6-DT

Intron

2

CP068263.2:38 436 995

709

LINE (L1)

KNL1

Intron

2

CP068263.2:38 614 143

315

SINE (Alu)

DNAJC17

Promoter

2

CP068263.2:38 614 143

315

SINE (Alu)

ZFYVE19

Intron

2

CP068263.2:39 531 742

328

SINE (Alu)

MGA

Intron

2

CP068263.2:43 641 520

325

SINE (Alu)

LOC105370802

Intron

2

CP068263.2:45 023 038

6 055

LINE (L1)

SEMA6D

Intron

2

CP068263.2:49 102 335

66

Retroposon (SVA)

CYP19A1

Intron

2

CP068263.2:51 705 824

345

SINE (Alu)

UNC13C

Intron

2

CP068263.2:52 318 050

314

SINE (Alu)

UNC13C

Intron

2

CP068263.2:53 913 580

183

Retroposon (SVA)

LOC124903498

Intron

1

CP068263.2:53 913 806

51

Retroposon (SVA)

LOC124903498

Intron

1

CP068263.2:55 792 313

106

SINE (Alu)

ALDH1A2

Intron

2

CP068263.2:56 106 612

320

SINE (Alu)

LOC124907518

Intron

2

CP068263.2:58 168 194

330

SINE (Alu)

ANXA2

Intron

2

CP068263.2:64 197 247

323

SINE (Alu)

TIPIN

Intron

2

CP068263.2:64 824 381

312

SINE (Alu)

SMAD3-DT

Intron

2

CP068263.2:65 174 494

318

SINE (Alu)

IQCH

Intron

2

CP068263.2:67 062 769

57

SINE (Alu)

GLCE

Intron

2

CP068263.2:69 587 991

175

Retroposon (SVA)

THSD4

Intron

2

CP068263.2:74 404 844

281

SINE (Alu)

SCAPER

Intron

2

CP068263.2:75 994 841

164

SINE (Alu)

CIB2

Promoter

2

CP068263.2:76 383 514

147

Retroposon (SVA)

HYKK

Intron

2

CP068263.2:76 507 733

318

SINE (Alu)

CHRNB4

Intron

2

CP068263.2:77 366 877

315

SINE (Alu)

LOC105370919

Promoter

2

CP068263.2:82 652 622

73

SINE (Alu)

SLC28A1

Intron

2

CP068263.2:83 196 621

334

SINE (Alu)

AKAP13

Intron

2

CP068263.2:83 433 722

325

SINE (Alu)

AKAP13

Intron

2

CP068263.2:90 530 518

99

Retroposon (SVA)

LOC101926994

Intron

1

CP068263.2:90 786 186

318

SINE (Alu)

CHD2

Intron

2

CP068263.2:93 349 076

291

SINE (Alu)

LOC105370995

Intron

2

CP068263.2:96 121 828

565

LINE (L1)

LINC02351

Intron

2

CP068263.2:248 491

313

SINE (Alu)

TUBB8P11

Intron

1

CP068264.2:14 215 583

352

SINE (Alu)

OR4K14

Intron

2

CP068264.2:14 703 671

126

Retroposon (SVA)

RNASE10

Intron

2

CP068264.2:14 703 880

73

Retroposon (SVA)

RNASE10

Intron

2

CP068264.2:17 906 483

330

SINE (Alu)

LOC105370409

Intron

2

CP068264.2:18 207 639

2 014

LINE (L1)

DHRS4L2

Intron

2

CP068264.2:18 410 930

166

SINE (Alu)

CHMP4A

Intron

2

CP068264.2:29 128 780

87

SINE (Alu)

SRP54-AS1

Intron

2

CP068264.2:29 131 238

312

SINE (Alu)

SRP54-AS1

Intron

2

CP068264.2:29 208 088

314

SINE (Alu)

SRP54

Intron

2

CP068264.2:34 604 158

331

SINE (Alu)

LOC105370465

Intron

2

CP068264.2:45 556 369

337

SINE (Alu)

LINC00640

Intron

2

CP068264.2:46 330 362

130

LTR (ERV1)

LINC02319

Intron

2

CP068264.2:49 534 324

320

SINE (Alu)

FBXO34

Intron

2

CP068264.2:67 389 826

85

Retroposon (SVA)

PSEN1

Intron

2

CP068264.2:67 743 055

1 418

LTR (ERV1)

ACOT1

Intron

1

CP068264.2:67 743 505

719

LTR (ERV1)

ACOT1

Intron

1

CP068264.2:67 754 433

185

SINE (Alu)

HEATR4

Intron

2

CP068264.2:67 764 611

309

SINE (Alu)

HEATR4

Intron

2

CP068264.2:69 938 554

1 012

LINE (L1)

TTLL5

Intron

2

CP068264.2:71 669 839

318

SINE (Alu)

AHSA1

Intron

2

CP068264.2:72 724 910

331

SINE (Alu)

NRXN3

Intron

2

CP068264.2:87 596 457

315

SINE (Alu)

UNC79

Intron

2

CP068264.2:94 611 756

326

SINE (Alu)

WDR25

Intron

2

CP068264.2:95 760 108

331

SINE (Alu)

LOC105370673

Intron

2

CP068264.2:101 041 873

367

LTR (ERVL)

LOC124907431

Promoter

2

CP068265.2:13 715 682

197

SINE (Alu)

FAM230C

Intron

2

CP068265.2:20 642 568

145

Retroposon (SVA)

ZDHHC20

Intron

2

CP068265.2:20 642 569

497

Retroposon (SVA)

ZDHHC20

Intron

2

CP068265.2:24 474 413

135

SINE (Alu)

MTMR6

Intron

2

CP068265.2:27 488 271

321

SINE (Alu)

PAN3

Intron

2

CP068265.2:28 214 233

66

LTR (ERV1)

MTUS2

Intron

2

CP068265.2:28 541 097

311

SINE (Alu)

MTUS2

Intron

2

CP068265.2:28 603 950

322

SINE (Alu)

MTUS2

Intron

2

CP068265.2:29 823 844

319

SINE (Alu)

HMGB1

Intron

2

CP068265.2:33 759 335

76

Retroposon (SVA)

LINC02343

Intron

2

CP068265.2:41 100 875

78

Retroposon (SVA)

VWA8

Intron

2

CP068265.2:41 372 209

324

SINE (Alu)

DGKH

Intron

2

CP068265.2:45 294 975

308

SINE (Alu)

CPB2-AS1

Intron

2

CP068265.2:45 366 990

318

SINE (Alu)

LCP1

Intron

2

CP068265.2:45 778 723

328

SINE (Alu)

LRCH1

Intron

2

CP068265.2:45 805 236

3 087

Retroposon (SVA)

LRCH1

Intron

2

CP068265.2:48 723 116

77

Retroposon (SVA)

SETDB2-PHF11

Intron

2

CP068265.2:59 110 423

326

SINE (Alu)

DIAPH3

Intron

2

CP068265.2:77 302 799

313

SINE (Alu)

OBI1-AS1

Intron

2

CP068265.2:84 144 201

231

SINE (Alu)

LOC105370290

Intron

2

CP068265.2:89 698 660

101

LTR (ERV1)

LINC01049

Intron

2

CP068265.2:91 376 118

319

SINE (Alu)

GPC5

Intron

2

CP068265.2:93 800 756

144

SINE (Alu)

TGDS

Promoter

2

CP068265.2:98 181 349

135

SINE (Alu)

DOCK9

Intron

2

CP068265.2:100 098 881

318

SINE (Alu)

NALCN-AS1

Intron

2

CP068265.2:107 842 850

61

LINE (L1)

MYO16

Intron

2

CP068265.2:109 388 985

315

SINE (Alu)

COL4A1

Intron

2

CP068265.2:109 862 682

128

LTR (ERV1)

NAXD

Intron

2

CP068265.2:111 926 533

80

Retroposon (SVA)

ATP11AUN

Intron

2

CP068265.2:112 115 809

313

SINE (Alu)

ATP11A

Intron

2

CP068265.2:113 324 614

325

SINE (Alu)

RASA3

Intron

2

CP068266.2:1 976 788

319

SINE (Alu)

CACNA1C

Intron

2

CP068266.2:2 835 906

262

SINE (Alu)

ITFG2

Intron

2

CP068266.2:3 101 640

128

Retroposon (SVA)

TSPAN9

Intron

2

CP068266.2:6 807 792

255

SINE (Alu)

CD4

Intron

2

CP068266.2:9 882 704

250

SINE (Alu)

CLEC12A

Intron

2

CP068266.2:10 960 223

334

SINE (Alu)

PRH1-PRR4

Intron

2

CP068266.2:10 975 580

304

SINE (Alu)

PRH1-PRR4

Intron

2

CP068266.2:12 283 007

97

Retroposon (SVA)

BORCS5

Intron

2

CP068266.2:12 654 312

1 782

LINE (L1)

APOLD1

Intron

2

CP068266.2:14 829 038

321

SINE (Alu)

ARHGDIB

Promoter

2

CP068266.2:14 829 038

321

SINE (Alu)

ARHGDIB

Intron

2

CP068266.2:18 474 599

288

SINE (Alu)

PIK3C2G

Intron

2

CP068266.2:20 199 299

320

SINE (Alu)

LOC105369688

Intron

2

CP068266.2:20 588 176

331

SINE (Alu)

SLCO1C1

Intron

2

CP068266.2:21 811 737

332

SINE (Alu)

ABCC9

Intron

2

CP068266.2:25 390 110

470

LINE (L1)

LMNTD1

Intron

2

CP068266.2:26 657 326

586

Retroposon (SVA)

ITPR2

Intron

2

CP068266.2:26 657 354

156

Retroposon (SVA)

ITPR2

Intron

1

CP068266.2:26 657 772

149

Retroposon (SVA)

ITPR2

Intron

1

CP068266.2:27 153 024

326

SINE (Alu)

STK38L

Intron

2

CP068266.2:27 583 597

315

SINE (Alu)

MRPS35

Intron

2

CP068266.2:27 945 242

6 061

LINE (L1)

LOC105369710

Intron

2

CP068266.2:28 158 038

315

SINE (Alu)

CCDC91

Intron

2

CP068266.2:29 535 979

185

SINE (Alu)

TMTC1

Intron

2

CP068266.2:29 543 253

312

SINE (Alu)

TMTC1

Intron

2

CP068266.2:32 686 985

313

SINE (Alu)

PKP2

Intron

2

CP068266.2:40 231 437

306

SINE (Alu)

LRRK2

Intron

2

CP068266.2:40 391 169

306

SINE (Alu)

MUC19

Intron

2

CP068266.2:41 225 229

310

SINE (Alu)

PDZRN4

Intron

2

CP068266.2:41 239 964

344

LINE (L1)

PDZRN4

Intron

2

CP068266.2:42 186 236

98

Retroposon (SVA)

YAF2

Intron

2

CP068266.2:42 369 287

73

LTR (ERVK)

PPHLN1

Intron

2

CP068266.2:44 984 370

310

SINE (Alu)

DBX2

Intron

2

CP068266.2:50 739 488

308

SINE (Alu)

ATF1

Intron

2

CP068266.2:53 648 538

315

SINE (Alu)

ATP5MC2

Promoter

2

CP068266.2:56 751 565

49

Retroposon (SVA)

HSD17B6

Intron

1

CP068266.2:59 085 415

340

SINE (Alu)

LRIG3-DT

Intron

2

CP068266.2:62 862 683

329

SINE (Alu)

LOC105369795

Intron

2

CP068266.2:64 182 842

85

LINE (L1)

KICS2

Intron

2

CP068266.2:64 720 062

175

SINE (Alu)

GNS

Intron

2

CP068266.2:66 597 283

332

SINE (Alu)

GRIP1

Intron

2

CP068266.2:67 934 329

325

SINE (Alu)

LINC01479

Intron

2

CP068266.2:77 981 522

329

SINE (Alu)

NAV3

Intron

2

CP068266.2:91 425 858

292

SINE (Alu)

LOC105369896

Intron

2

CP068266.2:94 256 702

320

SINE (Alu)

PLXNC1

Intron

2

CP068266.2:101 881 504

101

SINE (Alu)

DRAM1

Intron

2

CP068266.2:104 285 274

50

Retroposon (SVA)

TXNRD1

Intron

2

CP068266.2:104 884 820

187

SINE (Alu)

SLC41A2

Intron

2

CP068266.2:105 341 485

316

SINE (Alu)

LOC105369957

Intron

2

CP068266.2:121 878 118

191

SINE (Alu)

HPD

Intron

2

CP068266.2:121 990 164

462

Retroposon (SVA)

CFAP251

Intron

1

CP068266.2:122 704 280

49

Retroposon (SVA)

LOC124906985

Intron

1

CP068266.2:122 704 283

49

Retroposon (SVA)

LOC124906985

Intron

1

CP068266.2:124 855 294

309

SINE (Alu)

SCARB1

Intron

2

CP068266.2:126 414 081

326

SINE (Alu)

LINC02825

Intron

2

CP068266.2:126 429 324

327

SINE (Alu)

LINC02825

Intron

2

CP068266.2:126 723 341

319

SINE (Alu)

LINC02824

Intron

2

CP068266.2:127 028 600

224

SINE (Alu)

LOC105370063

Intron

2

CP068266.2:129 608 033

326

SINE (Alu)

TMEM132D

Intron

2

CP068266.2:130 642 135

141

SINE (Alu)

RIMBP2

Intron

2

CP068266.2:779 626

137

SINE (Alu)

WNK1

Intron

2

CP068267.2:2 838 941

124

SINE (Alu)

KCNQ1

Intron

2

CP068267.2:4 952 227

236

SINE (Alu)

MMP26

Intron

2

CP068267.2:5 010 999

301

SINE (Alu)

MMP26

Intron

2

CP068267.2:7 389 912

329

SINE (Alu)

SYT9

Intron

2

CP068267.2:7 466 057

327

SINE (Alu)

SYT9

Intron

2

CP068267.2:8 949 899

318

SINE (Alu)

DENND2B

Intron

2

CP068267.2:9 857 725

325

SINE (Alu)

SBF2-AS1

Intron

2

CP068267.2:9 948 771

330

SINE (Alu)

LOC101928008

Intron

2

CP068267.2:14 573 741

321

SINE (Alu)

COPB1

Intron

2

CP068267.2:16 096 396

322

SINE (Alu)

SOX6

Intron

2

CP068267.2:17 004 803

253

Retroposon (SVA)

PLEKHA7

Intron

2

CP068267.2:17 272 181

313

SINE (Alu)

PIK3C2A

Intron

2

CP068267.2:22 361 771

124

LINE (L1)

ANO5

Intron

2

CP068267.2:22 364 247

1 122

LINE (L1)

ANO5

Intron

2

CP068267.2:24 902 348

320

SINE (Alu)

LUZP2

Intron

2

CP068267.2:25 682 675

345

SINE (Alu)

LINC02699

Intron

2

CP068267.2:26 799 043

91

SINE (Alu)

ANO3

Intron

2

CP068267.2:27 262 274

6 058

LINE (L1)

BBOX1

Intron

2

CP068267.2:27 576 700

388

LINE (L1)

LGR4

Intron

2

CP068267.2:27 776 457

331

LTR (ERV1)

BDNF-AS

Intron

2

CP068267.2:31 266 980

316

SINE (Alu)

DCDC1

Intron

2

CP068267.2:32 548 205

310

SINE (Alu)

WT1

Intron

2

CP068267.2:34 364 862

324

SINE (Alu)

ABTB2

Intron

2

CP068267.2:42 181 175

330

SINE (Alu)

LINC02745

Intron

2

CP068267.2:47 253 984

175

Retroposon (SVA)

CSTPP1

Intron

2

CP068267.2:47 950 030

304

SINE (Alu)

NUP160

Intron

2

CP068267.2:49 811 499

302

SINE (Alu)

GRM5P1

Intron

2

CP068267.2:58 991 318

332

SINE (Alu)

LOC283194

Intron

2

CP068267.2:60 485 034

80

LINE (L1)

MS4A13

Intron

2

CP068267.2:62 482 327

319

SINE (Alu)

AHNAK

Intron

2

CP068267.2:63 882 702

259

LINE (L1)

MARK2

Intron

2

CP068267.2:66 210 945

320

SINE (Alu)

PACS1

Intron

2

CP068267.2:75 339 542

77

Retroposon (SVA)

RPS3

Intron

2

CP068267.2:77 212 145

313

SINE (Alu)

GDPD4

Intron

2

CP068267.2:78 718 193

329

SINE (Alu)

TENM4

Intron

2

CP068267.2:79 061 406

55

LTR (ERVL)

TENM4

Intron

2

CP068267.2:86 200 699

317

SINE (Alu)

EED

Intron

2

CP068267.2:89 394 639

332

SINE (Alu)

NOX4

Intron

2

CP068267.2:96 505 968

312

SINE (Alu)

JRKL-AS1

Intron

2

CP068267.2:99 867 915

328

SINE (Alu)

CNTN5

Intron

2

CP068267.2:100 757 844

67

LTR (ERV1)

ARHGAP42

Intron

2

CP068267.2:101 555 768

328

SINE (Alu)

TRPC6

Intron

2

CP068267.2:102 479 728

220

SINE (Alu)

LOC124902740

Intron

2

CP068267.2:104 689 622

1 466

LINE (L1)

LOC105369466

Intron

2

CP068267.2:104 919 973

323

SINE (Alu)

CASP4LP

Intron

2

CP068267.2:110 116 232

326

SINE (Alu)

ZC3H12C

Intron

2

CP068267.2:114 530 382

71

SINE (Alu)

NXPE2

Intron

2

CP068267.2:117 829 192

317

SINE (Alu)

DSCAML1

Intron

2

CP068267.2:118 468 710

321

SINE (Alu)

KMT2A

Intron

2

CP068267.2:118 715 549

133

SINE (Alu)

LOC105369519

Intron

2

CP068267.2:119 029 799

322

SINE (Alu)

CENATAC

Intron

2

CP068267.2:127 104 382

331

SINE (Alu)

LOC101929473

Intron

2

CP068267.2:130 127 238

452

Retroposon (SVA)

APLP2

Intron

2

CP068267.2:473 330

318

SINE (Alu)

ANO9

Intron

2

CP068268.2:3 530 702

315

SINE (Alu)

LOC105376360

Intron

2

CP068268.2:4 863 983

71

LINE (L1)

AKR1E2

Intron

2

CP068268.2:5 002 348

326

SINE (Alu)

AKR1C2

Intron

1

CP068268.2:9 275 804

198

Retroposon (SVA)

LOC101928272

Intron

2

CP068268.2:10 778 281

170

SINE (Alu)

CELF2

Intron

2

CP068268.2:14 722 869

64

LINE (L1)

FAM107B

Intron

2

CP068268.2:19 127 408

330

SINE (Alu)

MALRD1

Intron

2

CP068268.2:19 280 911

317

SINE (Alu)

MALRD1

Intron

2

CP068268.2:24 675 640

97

Retroposon (SVA)

ARHGAP21

Intron

2

CP068268.2:26 090 723

315

SINE (Alu)

MYO3A

Intron

2

CP068268.2:26 503 688

304

SINE (Alu)

APBB1IP

Intron

2

CP068268.2:29 454 890

569

LINE (L1)

SVIL-AS1

Intron

2

CP068268.2:29 760 714

173

SINE (Alu)

SVIL

Intron

2

CP068268.2:30 356 857

312

SINE (Alu)

MTPAP

Intron

2

CP068268.2:30 638 183

126

SINE (Alu)

LYZL2

Intron

2

CP068268.2:32 472 006

49

LINE (L1)

LOC101929431

Intron

2

CP068268.2:34 285 280

319

SINE (Alu)

PARD3

Intron

2

CP068268.2:44 303 375

168

Retroposon (SVA)

LINC02916

Intron

1

CP068268.2:49 919 156

315

SINE (Alu)

VSTM4

Intron

2

CP068268.2:50 012 404

337

SINE (Alu)

TMEM273

Intron

2

CP068268.2:52 241 562

49

Retroposon (SVA)

PRKG1

Intron

2

CP068268.2:52 951 752

275

SINE (Alu)

PRKG1

Intron

2

CP068268.2:55 230 323

330

SINE (Alu)

PCDH15

Intron

2

CP068268.2:55 607 393

314

SINE (Alu)

PCDH15

Intron

2

CP068268.2:62 840 679

170

SINE (Alu)

ARID5B

Intron

2

CP068268.2:70 106 724

315

SINE (Alu)

HKDC1

Intron

2

CP068268.2:71 715 465

320

SINE (Alu)

SGPL1

Intron

2

CP068268.2:72 303 748

327

SINE (Alu)

CDH23

Intron

2

CP068268.2:74 555 179

337

SINE (Alu)

BMS1P4-AGAP5

Intron

2

CP068268.2:85 102 012

314

SINE (Alu)

LRIT2

Intron

2

CP068268.2:86 896 319

311

SINE (Alu)

GRID1

Intron

2

CP068268.2:87 790 483

338

SINE (Alu)

BMPR1A

Intron

2

CP068268.2:88 939 111

330

SINE (Alu)

LOC105378414

Intron

2

CP068268.2:95 704 117

392

LINE (L1)

CYP2C19

Intron

2

CP068268.2:102 861 010

320

SINE (Alu)

ARMH3

Intron

2

CP068268.2:102 921 189

141

Retroposon (SVA)

ARMH3

Intron

2

CP068268.2:104 015 782

177

Retroposon (SVA)

NT5C2

Intron

1

CP068268.2:104 225 372

313

SINE (Alu)

PCGF6

Intron

2

CP068268.2:104 471 083

259

SINE (Alu)

LOC124902496

Promoter

2

CP068268.2:104 471 083

259

SINE (Alu)

NEURL1

Intron

2

CP068268.2:107 018 352

142

SINE (Alu)

LOC105378469

Intron

2

CP068268.2:111 134 870

311

SINE (Alu)

MXI1

Intron

2

CP068268.2:113 205 090

315

SINE (Alu)

GUCY2GP

Intron

2

CP068268.2:113 289 049

328

SINE (Alu)

ACSL5

Intron

2

CP068268.2:115 681 774

49

Retroposon (SVA)

ABLIM1

Intron

2

CP068268.2:116 140 819

320

SINE (Alu)

ATRNL1

Intron

2

CP068268.2:117 229 439

324

SINE (Alu)

CCDC172

Intron

2

CP068268.2:119 905 022

318

SINE (Alu)

LINC03036

Intron

2

CP068268.2:120 176 576

332

SINE (Alu)

GRK5

Intron

2

CP068268.2:121 742 443

63

LTR (ERV1)

WDR11-DT

Intron

2

CP068268.2:128 286 207

314

SINE (Alu)

DOCK1

Intron

2

CP068268.2:131 025 575

97

LINE (L1)

C10orf143

Intron

2

CP068269.2:1 717 408

72

SINE (Alu)

LOC105375951

Intron

2

CP068269.2:4 819 338

290

SINE (Alu)

RCL1

Intron

2

CP068269.2:6 295 535

714

LINE (L1)

LOC107987046

Intron

2

CP068269.2:9 145 491

321

SINE (Alu)

PTPRD

Intron

2

CP068269.2:10 470 782

315

SINE (Alu)

PTPRD

Intron

2

CP068269.2:18 597 553

6 097

LINE (L1)

ADAMTSL1

Intron

2

CP068269.2:22 072 341

76

SINE (Alu)

CDKN2B-AS1

Intron

1

CP068269.2:32 330 851

231

SINE (Alu)

LOC107987059

Intron

2

CP068269.2:32 710 373

75

Retroposon (SVA)

LOC105376017

Intron

2

CP068269.2:34 293 360

332

SINE (Alu)

KIF24

Intron

2

CP068269.2:35 038 163

63

LINE (L1)

LOC105376025

Intron

2

CP068269.2:76 857 935

69

LINE (L1)

LOC124906851

Intron

2

CP068269.2:81 331 129

317

SINE (Alu)

TJP2

Intron

2

CP068269.2:82 997 613

314

SINE (Alu)

TRPM3

Intron

2

CP068269.2:83 458 461

325

SINE (Alu)

TRPM3

Intron

2

CP068269.2:84 767 523

313

SINE (Alu)

TMC1

Intron

2

CP068269.2:84 951 633

334

SINE (Alu)

TMC1

Intron

2

CP068269.2:84 957 302

97

Retroposon (SVA)

TMC1

Intron

2

CP068269.2:85 078 955

347

SINE (Alu)

ALDH1A1

Intron

2

CP068269.2:88 222 509

407

Retroposon (SVA)

PCSK5

Intron

2

CP068269.2:88 463 149

132

SINE (MIR)

PCSK5

Intron

2

CP068269.2:88 992 783

326

SINE (Alu)

PRUNE2

Intron

2

CP068269.2:91 626 241

3 768

LINE (L1)

LOC124902328

Intron

2

CP068269.2:97 437 226

307

SINE (Alu)

LOC105376119

Intron

2

CP068269.2:101 049 287

63

LINE (L1)

LOC124902205

Intron

2

CP068269.2:102 597 254

306

SINE (Alu)

LINC01508

Intron

2

CP068269.2:104 686 550

320

SINE (Alu)

CENPP

Intron

2

CP068269.2:106 136 047

250

SINE (Alu)

LOC124902216

Intron

2

CP068269.2:106 794 432

314

SINE (Alu)

FBP1

Intron

2

CP068269.2:110 499 969

327

SINE (Alu)

GABBR2

Intron

2

CP068269.2:112 443 781

81

SINE (Alu)

INVS

Intron

2

CP068269.2:115 487 860

189

SINE (Alu)

LINC01492

Intron

2

CP068269.2:119 632 661

61

SINE (Alu)

LINC01509

Intron

2

CP068269.2:121 668 497

307

SINE (Alu)

PTPN3

Promoter

2

CP068269.2:121 668 497

307

SINE (Alu)

PTPN3

Intron

2

CP068269.2:124 278 134

326

SINE (Alu)

SUSD1

Intron

2

CP068269.2:124 311 520

315

SINE (Alu)

SUSD1

Intron

2

CP068269.2:124 685 972

226

Retroposon (SVA)

KIAA1958

Intron

1

CP068269.2:124 686 231

175

Retroposon (SVA)

KIAA1958

Intron

2

CP068269.2:127 358 271

292

SINE (Alu)

DELEC1

Intron

2

CP068269.2:141 137 397

138

SINE (Alu)

PHYHD1

Intron

2

CP068269.2:141 894 415

312

SINE (Alu)

PRRX2

Intron

2

CP068269.2:144 740 730

2 979

LINE (L1)

CFAP77

Intron

2

CP068269.2:146 110 857

226

Retroposon (SVA)

VAV2

Intron

2

CP068269.2:194 449

321

SINE (Alu)

LOC105375943

Promoter

2

CP068269.2:863 345

114

Retroposon (SVA)

DMRT1

Intron

2

CP068270.2:3 524 025

329

SINE (Alu)

CSMD1

Intron

2

CP068270.2:4 117 692

317

SINE (Alu)

CSMD1

Intron

2

CP068270.2:4 348 134

95

LINE (L1)

CSMD1

Intron

2

CP068270.2:5 725 123

607

LINE (L1)

LOC105377795

Intron

2

CP068270.2:6 485 699

317

SINE (Alu)

AGPAT5

Intron

2

CP068270.2:10 137 744

311

SINE (Alu)

TNKS

Intron

2

CP068270.2:10 681 512

322

SINE (Alu)

ERI1

Intron

2

CP068270.2:11 544 378

70

LTR (ERVK)

FAM85B

Intron

1

CP068270.2:12 907 672

328

SINE (Alu)

LOC729732

Intron

2

CP068270.2:13 365 524

315

SINE (Alu)

DLC1

Intron

2

CP068270.2:15 385 820

222

SINE (Alu)

SGCZ

Intron

2

CP068270.2:17 372 585

320

SINE (Alu)

MICU3

Intron

2

CP068270.2:17 675 688

331

SINE (Alu)

MTMR7

Intron

2

CP068270.2:19 025 704

332

SINE (Alu)

PSD3

Intron

2

CP068270.2:19 059 693

971

LTR (ERVK)

PSD3

Intron

2

CP068270.2:26 048 555

112

LINE (L1)

LOC107986933

Intron

2

CP068270.2:28 963 145

129

LINE (L1)

EXTL3

Promoter

2

CP068270.2:28 963 145

129

LINE (L1)

EXTL3

Intron

2

CP068270.2:31 665 091

335

SINE (Alu)

LOC101929492

Intron

2

CP068270.2:32 796 257

198

LINE (L1)

NRG1

Intron

2

CP068270.2:34 175 409

284

SINE (Alu)

LOC105379364

Intron

2

CP068270.2:39 283 681

314

SINE (Alu)

ADAM9

Intron

2

CP068270.2:42 456 695

311

SINE (Alu)

PLAT

Intron

2

CP068270.2:52 201 378

321

SINE (Alu)

PCMTD1

Intron

2

CP068270.2:54 436 680

313

SINE (Alu)

LYPLA1-TCEA1

Intron

2

CP068270.2:55 866 232

315

SINE (Alu)

XKR4

Intron

2

CP068270.2:60 716 533

316

SINE (Alu)

LOC105375864

Intron

2

CP068270.2:61 037 962

324

SINE (Alu)

RAB2A

Intron

2

CP068270.2:66 088 341

72

Retroposon (SVA)

MTFR1

Intron

2

CP068270.2:66 658 372

175

Retroposon (SVA)

LOC102724687

Intron

2

CP068270.2:70 055 900

116

LTR (ERV1)

SULF1

Intron

2

CP068270.2:73 310 604

6 052

LINE (L1)

KCNB2

Intron

2

CP068270.2:73 800 713

327

SINE (Alu)

LOC105375899

Promoter

2

CP068270.2:74 052 032

172

SINE (Alu)

STAU2

Intron

2

CP068270.2:74 150 241

330

SINE (Alu)

STAU2

Intron

2

CP068270.2:76 854 880

1 041

LINE (L1)

LINC01111

Intron

2

CP068270.2:80 270 047

319

SINE (Alu)

LOC101927040

Intron

2

CP068270.2:81 286 924

314

SINE (Alu)

ZNF704

Intron

2

CP068270.2:87 184 808

320

SINE (Alu)

PSKH2

Intron

2

CP068270.2:87 814 335

147

Retroposon (SVA)

CNGB3

Promoter

2

CP068270.2:87 814 335

147

Retroposon (SVA)

CNGB3

Intron

2

CP068270.2:91 499 130

109

LTR (ERVL)

LINC00534

Intron

2

CP068270.2:95 615 990

168

SINE (Alu)

VIRMA

Intron

2

CP068270.2:96 503 803

231

SINE (Alu)

CFAP418-AS1

Intron

2

CP068270.2:96 580 482

314

SINE (Alu)

CFAP418-AS1

Intron

2

CP068270.2:104 056 669

245

Retroposon (SVA)

MAILR

Intron

2

CP068270.2:106 786 176

326

SINE (Alu)

ZFPM2

Intron

2

CP068270.2:107 844 447

325

SINE (Alu)

OXR1

Intron

2

CP068270.2:110 217 896

322

SINE (Alu)

TRHR

Intron

2

CP068270.2:116 603 468

324

SINE (Alu)

TRPS1

Intron

2

CP068270.2:117 806 203

718

Retroposon (SVA)

EIF3H

Intron

2

CP068270.2:121 797 875

317

SINE (Alu)

SNTB1

Intron

2

CP068270.2:126 458 371

317

SINE (Alu)

NSMCE2

Intron

2

CP068270.2:126 461 170

353

SINE (Alu)

NSMCE2

Intron

2

CP068270.2:126 716 410

6 007

LINE (L1)

LINC02964

Intron

2

CP068270.2:132 282 389

311

SINE (Alu)

LOC105375760

Intron

2

CP068270.2:137 820 678

330

SINE (Alu)

LINC02055

Intron

2

CP068270.2:138 964 925

319

SINE (Alu)

LOC401478

Intron

2

CP068270.2:139 161 052

318

SINE (Alu)

LOC401478

Intron

2

CP068271.2:2 382 174

77

Retroposon (SVA)

SNX8

Intron

2

CP068271.2:2 674 652

107

SINE (Alu)

IQCE

Intron

2

CP068271.2:8 616 432

327

SINE (Alu)

NXPH1

Intron

2

CP068271.2:15 262 062

60

LTR (ERV1)

AGMO

Intron

2

CP068271.2:15 556 034

134

LTR (ERVL)

AGMO

Intron

2

CP068271.2:18 412 782

280

SINE (Alu)

HDAC9

Intron

2

CP068271.2:23 776 953

125

Retroposon (SVA)

CCDC126

Intron

2

CP068271.2:26 303 990

119

LINE (L1)

NFE2L3

Intron

2

CP068271.2:38 626 104

322

SINE (Alu)

AMPH

Intron

2

CP068271.2:38 630 323

333

SINE (Alu)

AMPH

Intron

2

CP068271.2:43 532 806

253

SINE (Alu)

HECW1

Intron

2

CP068271.2:48 018 075

322

SINE (Alu)

PKD1L1

Intron

2

CP068271.2:68 345 877

6 044

LINE (L1)

TYW1

Intron

2

CP068271.2:68 364 737

319

SINE (Alu)

TYW1

Intron

2

CP068271.2:79 769 073

328

SINE (Alu)

MAGI2

Intron

2

CP068271.2:82 045 199

332

SINE (Alu)

SEMA3C

Intron

2

CP068271.2:84 052 406

316

SINE (Alu)

PCLO

Intron

2

CP068271.2:85 626 331

317

SINE (Alu)

SEMA3A

Intron

2

CP068271.2:86 363 451

306

SINE (Alu)

SEMA3D

Intron

2

CP068271.2:91 220 124

315

SINE (Alu)

STEAP2-AS1

Intron

2

CP068271.2:91 992 921

206

Retroposon (SVA)

CDK14

Intron

2

CP068271.2:93 363 499

316

SINE (Alu)

CYP51A1

Intron

2

CP068271.2:96 385 566

326

SINE (Alu)

PPP1R9A

Intron

2

CP068271.2:98 667 750

315

SINE (Alu)

LOC105375416

Intron

2

CP068271.2:102 681 693

2 777

Retroposon (SVA)

COL26A1

Intron

2

CP068271.2:103 867 428

84

SINE (Alu)

POLR2J3-UPK3BL2

Intron

2

CP068271.2:104 162 973

323

SINE (Alu)

FAM185A

Intron

2

CP068271.2:105 937 900

50

SINE (Alu)

LHFPL3

Intron

2

CP068271.2:106 264 512

103

SINE (Alu)

LOC101927902

Intron

2

CP068271.2:106 569 812

324

SINE (Alu)

SRPK2

Intron

2

CP068271.2:112 163 030

97

LINE (L1)

IMMP2L

Intron

2

CP068271.2:115 628 405

310

SINE (Alu)

FOXP2

Intron

2

CP068271.2:119 758 768

317

SINE (Alu)

LOC105375471

Intron

2

CP068271.2:123 785 759

326

SINE (Alu)

CADPS2

Intron

2

CP068271.2:124 629

227

LINE (L1)

LOC105375112

Intron

2

CP068271.2:124 771 869

6 076

LINE (L1)

IQUB

Intron

2

CP068271.2:126 270 363

320

SINE (Alu)

POT1-AS1

Intron

2

CP068271.2:126 339 965

167

LTR (ERVL)

POT1-AS1

Intron

2

CP068271.2:129 073 083

320

SINE (Alu)

SND1

Intron

2

CP068271.2:130 955 874

318

SINE (Alu)

NRF1

Intron

2

CP068271.2:135 973 338

419

LINE (L1)

BPGM

Intron

2

CP068271.2:136 047 537

322

SINE (Alu)

LOC124901750

Intron

2

CP068271.2:136 812 007

329

SINE (Alu)

CNOT4

Intron

2

CP068271.2:138 459 439

302

SINE (Alu)

LOC349160

Intron

2

CP068271.2:141 676 137

222

Retroposon (SVA)

SLC37A3

Intron

2

CP068271.2:149 923 454

135

SINE (Alu)

CUL1

Intron

2

CP068271.2:151 116 815

318

SINE (Alu)

ACTR3C

Intron

2

CP068271.2:152 533 887

143

SINE (Alu)

NUB1

Intron

2

CP068271.2:156 495 059

305

SINE (Alu)

LOC105375592

Intron

2

CP068271.2:158 746 778

338

SINE (Alu)

PTPRN2

Intron

2

CP068272.2:2 841 255

305

SINE (Alu)

SERPINB6

Promoter

2

CP068272.2:7 310 938

81

LTR (ERV1)

LOC102724234

Intron

2

CP068272.2:9 939 215

313

SINE (Alu)

OFCC1

Intron

2

CP068272.2:10 902 109

134

SINE (Alu)

ELOVL2

Intron

2

CP068272.2:13 064 129

6 056

LINE (L1)

PHACTR1

Intron

2

CP068272.2:13 394 506

328

SINE (Alu)

RPS4XP7

Promoter

2

CP068272.2:15 288 747

48

Retroposon (SVA)

JARID2

Intron

1

CP068272.2:15 288 768

50

Retroposon (SVA)

JARID2

Intron

1

CP068272.2:17 288 249

320

SINE (Alu)

CAP2

Intron

2

CP068272.2:19 027 502

326

SINE (Alu)

LOC101928519

Intron

2

CP068272.2:20 041 064

314

SINE (Alu)

MBOAT1

Intron

2

CP068272.2:24 682 785

5 931

LINE (L1)

RIPOR2

Intron

2

CP068272.2:27 249 849

49

LTR (ERV1)

ZNF391

Intron

1

CP068272.2:28 879 239

101

SINE (Alu)

ZNF311

Intron

2

CP068272.2:29 603 853

2 300

Retroposon (SVA)

HLA-F

Intron

2

CP068272.2:29 841 615

316

SINE (Alu)

HCG9

Intron

2

CP068272.2:31 265 398

84

LINE (L1)

MICA

Intron

2

CP068272.2:36 183 676

101

LTR (ERV1)

ETV7

Intron

2

CP068272.2:38 355 201

136

LTR (ERVK)

BTBD9

Intron

2

CP068272.2:38 778 843

313

SINE (Alu)

DNAH8

Intron

2

CP068272.2:42 430 462

160

SINE (Alu)

UBR2

Intron

2

CP068272.2:42 896 868

323

SINE (Alu)

KLC4

Intron

2

CP068272.2:43 757 249

317

SINE (Alu)

LINC01512

Intron

2

CP068272.2:45 835 182

326

SINE (Alu)

CLIC5

Intron

2

CP068272.2:51 717 831

6 032

LINE (L1)

PKHD1

Intron

2

CP068272.2:53 584 806

285

SINE (Alu)

LOC124901334

Intron

2

CP068272.2:53 623 893

313

SINE (Alu)

LOC124901333

Intron

2

CP068272.2:54 692 012

140

SINE (Alu)

FAM83B

Intron

2

CP068272.2:56 735 173

2 588

Retroposon (SVA)

DST

Intron

2

CP068272.2:57 438 109

310

SINE (Alu)

PRIM2

Intron

2

CP068272.2:62 724 632

133

SINE (Alu)

KHDRBS2

Intron

2

CP068272.2:66 607 855

309

SINE (Alu)

EYS

Intron

2

CP068272.2:70 300 658

76

Retroposon (SVA)

ADGRB3

Intron

2

CP068272.2:74 889 500

315

SINE (Alu)

CD109

Intron

2

CP068272.2:75 334 018

1 147

LINE (L1)

LOC101928516

Intron

2

CP068272.2:75 805 446

326

SINE (Alu)

LOC101928516

Intron

2

CP068272.2:76 483 619

49

SINE (Alu)

FILIP1

Intron

2

CP068272.2:78 387 367

310

SINE (Alu)

LOC101928570

Intron

2

CP068272.2:78 831 815

303

SINE (Alu)

MEI4

Intron

2

CP068272.2:79 310 806

294

SINE (Alu)

LOC105377865

Intron

2

CP068272.2:84 185 928

313

SINE (Alu)

UBE3D

Intron

2

CP068272.2:91 739 448

320

SINE (Alu)

MAP3K7

Intron

2

CP068272.2:109 131 038

272

Retroposon (SVA)

SEC63

Intron

1

CP068272.2:111 652 259

308

SINE (Alu)

SLC22A16

Intron

2

CP068272.2:115 410 352

317

SINE (Alu)

HDAC2-AS2

Intron

2

CP068272.2:117 169 353

290

SINE (Alu)

FRK

Intron

2

CP068272.2:123 028 920

103

LINE (L2)

LOC105377979

Intron

2

CP068272.2:123 847 137

321

SINE (Alu)

PKIB

Intron

2

CP068272.2:125 365 522

320

SINE (Alu)

NKAIN2

Intron

2

CP068272.2:127 291 111

314

SINE (Alu)

TRMT11

Intron

2

CP068272.2:131 488 431

291

SINE (Alu)

SAMD3

Intron

2

CP068272.2:132 049 393

316

SINE (Alu)

EPB41L2

Intron

2

CP068272.2:132 292 270

943

LINE (L1)

LOC102723445

Intron

2

CP068272.2:133 194 329

320

SINE (Alu)

CCN2-AS1

Intron

2

CP068272.2:134 599 474

179

SINE (Alu)

EYA4

Intron

2

CP068272.2:137 339 890

71

SINE (Alu)

PDE7B

Intron

2

CP068272.2:140 470 041

316

SINE (Alu)

LOC102723690

Intron

2

CP068272.2:146 690 741

97

LINE (L1)

EPM2A

Intron

2

CP068272.2:149 677 325

283

SINE (Alu)

SASH1

Intron

2

CP068272.2:155 567 174

275

SINE (Alu)

LOC105378067

Promoter

2

CP068272.2:155 567 174

275

SINE (Alu)

LOC105378067

Intron

2

CP068272.2:156 319 028

328

SINE (Alu)

TIAM2

Intron

2

CP068272.2:157 199 315

305

SINE (Alu)

LOC101928923

Intron

2

CP068272.2:158 278 908

328

SINE (Alu)

ARID1B

Intron

2

CP068272.2:159 990 424

318

SINE (Alu)

SYTL3

Intron

2

CP068272.2:162 273 904

315

SINE (Alu)

LOC105378093

Intron

2

CP068272.2:167 234 415

332

SINE (Alu)

PDE10A

Intron

2

CP068272.2:169 930 528

325

SINE (Alu)

SMOC2

Intron

2

CP068273.2:1 857 117

309

SINE (Alu)

LOC124901165

Intron

2

CP068273.2:3 418 493

320

SINE (Alu)

LINC01019

Intron

2

CP068273.2:3 421 224

327

SINE (Alu)

LINC01019

Intron

2

CP068273.2:7 785 055

312

SINE (Alu)

CFAP90

Intron

2

CP068273.2:10 514 046

336

SINE (Alu)

ANKRD33B

Intron

2

CP068273.2:11 100 959

323

SINE (Alu)

CTNND2

Intron

2

CP068273.2:13 357 466

56

LINE (L1)

LOC105374660

Intron

2

CP068273.2:13 792 771

314

SINE (Alu)

DNAH5

Intron

2

CP068273.2:13 832 228

313

SINE (Alu)

DNAH5

Intron

2

CP068273.2:16 655 697

310

SINE (Alu)

MYO10

Intron

2

CP068273.2:21 346 640

313

SINE (Alu)

LOC102723561

Intron

2

CP068273.2:25 338 978

294

SINE (Alu)

LINC02211

Intron

2

CP068273.2:33 917 310

6 058

LINE (L1)

ADAMTS12

Intron

2

CP068273.2:34 235 086

320

SINE (Alu)

C1QTNF3-AMACR

Intron

2

CP068273.2:37 937 889

281

SINE (Alu)

WDR70

Intron

2

CP068273.2:39 542 380

335

SINE (Alu)

C9

Intron

2

CP068273.2:39 584 033

77

Retroposon (SVA)

C9

Intron

2

CP068273.2:56 700 127

328

SINE (Alu)

IL31RA

Intron

2

CP068273.2:63 380 905

324

SINE (Alu)

IPO11

Intron

2

CP068273.2:66 799 023

345

Retroposon (SVA)

ERBIN

Intron

2

CP068273.2:69 790 093

650

LINE (L1)

LOC107984116

Intron

2

CP068273.2:77 456 269

295

SINE (Alu)

CRHBP

Intron

2

CP068273.2:77 524 535

147

Retroposon (SVA)

AGGF1

Intron

2

CP068273.2:77 940 375

325

SINE (Alu)

WDR41

Intron

2

CP068273.2:78 760 229

285

SINE (Alu)

AP3B1

Intron

2

CP068273.2:79 463 339

318

SINE (Alu)

ARSB

Intron

2

CP068273.2:80 202 146

306

SINE (Alu)

CMYA5

Intron

2

CP068273.2:83 675 995

305

SINE (Alu)

XRCC4

Intron

2

CP068273.2:91 188 443

153

SINE (Alu)

ADGRV1

Intron

2

CP068273.2:97 075 093

338

SINE (Alu)

CAST

Intron

2

CP068273.2:109 785 655

167

LINE (L1)

LOC285638

Intron

2

CP068273.2:109 845 795

97

Retroposon (SVA)

PJA2

Intron

2

CP068273.2:111 960 940

186

SINE (Alu)

CAMK4

Intron

2

CP068273.2:118 013 084

305

SINE (Alu)

LINC00992

Intron

2

CP068273.2:120 200 303

334

SINE (Alu)

LOC348958

Promoter

2

CP068273.2:121 276 278

315

SINE (Alu)

PRR16

Intron

2

CP068273.2:123 455 521

320

SINE (Alu)

SNX24

Intron

2

CP068273.2:123 753 516

520

LINE (L1)

TUBB8P11

Intron

2

CP068273.2:137 581 809

234

LINE (L2)

SPOCK1

Intron

2

CP068273.2:138 669 937

65

LTR (ERV1)

BRD8

Intron

2

CP068273.2:139 924 858

295

SINE (Alu)

SPATA24

Intron

2

CP068273.2:147 526 118

317

SINE (Alu)

PPP2R2B

Intron

2

CP068273.2:156 396 451

314

SINE (Alu)

SGCD

Intron

2

CP068273.2:156 439 730

2 494

LINE (L1)

SGCD

Intron

2

CP068273.2:157 658 658

333

SINE (Alu)

MED7

Intron

2

CP068273.2:158 900 045

254

SINE (Alu)

LINC02227

Intron

2

CP068273.2:165 474 495

309

SINE (Alu)

LINC03000

Intron

2

CP068273.2:168 283 846

321

SINE (Alu)

TENM2

Intron

2

CP068273.2:171 270 546

85

SINE (Alu)

KCNIP1

Intron

2

CP068273.2:173 656 926

118

LINE (L1)

CREBRF

Intron

1

CP068273.2:177 568 572

330

SINE (Alu)

ZNF346

Intron

2

CP068273.2:178 279 547

169

SINE (Alu)

FAM153A

Intron

2

CP068273.2:180 497 165

147

SINE (Alu)

RNF130

Intron

2

CP068273.2:180 746 045

174

SINE (Alu)

RASGEF1C

Intron

2

CP068273.2:181 478 951

321

SINE (Alu)

BTNL8

Intron

2

CP068274.2:1 306 582

318

SINE (Alu)

MAEA

Intron

2

CP068274.2:2 568 818

317

SINE (Alu)

FAM193A

Intron

2

CP068274.2:4 004 477

80

LTR (ERV1)

LOC105374359

Intron

2

CP068274.2:4 038 891

319

SINE (Alu)

LOC101928217

Intron

2

CP068274.2:8 373 198

159

SINE (Alu)

ACOX3

Intron

2

CP068274.2:9 950 436

248

SINE (Alu)

SLC2A9

Intron

2

CP068274.2:9 954 701

316

SINE (Alu)

SLC2A9

Intron

2

CP068274.2:14 937 064

114

LTR (ERVL)

CPEB2-DT

Intron

2

CP068274.2:15 773 375

496

Retroposon (SVA)

CD38

Intron

2

CP068274.2:16 374 994

121

Retroposon (SVA)

LOC105374505

Intron

2

CP068274.2:18 990 978

326

SINE (Alu)

LOC107986263

Intron

2

CP068274.2:19 347 230

324

SINE (Alu)

LINC02438

Intron

2

CP068274.2:36 292 569

314

SINE (Alu)

DTHD1

Intron

2

CP068274.2:38 999 418

281

SINE (Alu)

TMEM156

Intron

2

CP068274.2:39 378 562

322

SINE (Alu)

KLB

Intron

2

CP068274.2:39 675 502

162

SINE (Alu)

UBE2K

Intron

2

CP068274.2:40 853 100

322

SINE (Alu)

APBB2

Intron

2

CP068274.2:41 023 194

133

Retroposon (SVA)

APBB2

Intron

2

CP068274.2:57 036 762

320

SINE (Alu)

LNX1

Intron

2

CP068274.2:58 993 922

318

SINE (Alu)

CLOCK

Intron

2

CP068274.2:59 545 992

196

SINE (Alu)

CRACD

Intron

2

CP068274.2:67 788 030

290

SINE (Alu)

TECRL

Intron

2

CP068274.2:71 614 671

317

SINE (Alu)

TMPRSS11F

Intron

2

CP068274.2:72 690 165

267

LINE (L1)

TUBB8P11

Intron

2

CP068274.2:72 946 089

310

SINE (Alu)

UGT2A2

Intron

2

CP068274.2:73 581 961

183

LINE (L1)

CSN3

Promoter

2

CP068274.2:73 581 961

183

LINE (L1)

CSN3

Intron

2

CP068274.2:75 446 974

318

SINE (Alu)

NPFFR2

Intron

2

CP068274.2:79 413 317

316

SINE (Alu)

ART3

Intron

2

CP068274.2:79 837 493

2 059

Retroposon (SVA)

SHROOM3

Intron

2

CP068274.2:81 736 931

325

SINE (Alu)

FRAS1

Intron

2

CP068274.2:82 894 257

83

LTR (ERV1)

LINC00989

Intron

2

CP068274.2:83 041 340

58

LINE (L1)

LOC105377302

Intron

2

CP068274.2:83 303 273

6 049

LINE (L1)

ANTXR2

Intron

1

CP068274.2:85 588 188

304

SINE (Alu)

LOC105377308

Intron

2

CP068274.2:88 878 813

314

SINE (Alu)

ARHGAP24

Intron

2

CP068274.2:89 350 681

160

LTR (ERV1)

MAPK10

Intron

2

CP068274.2:92 091 986

319

SINE (Alu)

FAM13A

Intron

2

CP068274.2:92 373 428

214

SINE (Alu)

FAM13A

Intron

2

CP068274.2:93 980 211

60

LTR (ERVL)

CCSER1

Intron

2

CP068274.2:95 798 087

319

SINE (Alu)

GRID2

Intron

2

CP068274.2:97 807 621

324

SINE (Alu)

PDLIM5

Intron

2

CP068274.2:98 264 406

318

SINE (Alu)

BMPR1B

Intron

2

CP068274.2:99 966 112

319

SINE (Alu)

LINC02267

Intron

2

CP068274.2:104 434 814

322

SINE (Alu)

PPP3CA

Intron

2

CP068274.2:105 736 347

1 888

LINE (L1)

LOC105377621

Intron

2

CP068274.2:106 266 328

2 512

LINE (L1)

SLC9B1

Intron

2

CP068274.2:120 081 692

904

LINE (L1)

LOC107986306

Intron

2

CP068274.2:127 013 551

129

LINE (L1)

LINC01091

Intron

2

CP068274.2:131 590 178

326

SINE (Alu)

PGRMC2

Intron

2

CP068274.2:143 337 477

151

SINE (Alu)

MAML3

Intron

2

CP068274.2:149 009 736

327

Retroposon (SVA)

C4orf51

Intron

1

CP068274.2:149 208 720

318

SINE (Alu)

ZNF827

Promoter

2

CP068274.2:149 208 720

318

SINE (Alu)

ZNF827

Intron

2

CP068274.2:152 561 795

340

SINE (Alu)

LINC02355

Intron

2

CP068274.2:153 696 602

318

SINE (Alu)

LRBA

Intron

2

CP068274.2:153 984 112

98

Retroposon (SVA)

LRBA

Intron

2

CP068274.2:154 538 668

126

Retroposon (SVA)

SH3D19

Intron

2

CP068274.2:157 304 320

322

SINE (Alu)

LOC101927947

Intron

2

CP068274.2:158 831 227

97

SINE (Alu)

LOC105377505

Intron

2

CP068274.2:166 928 648

314

SINE (Alu)

MARCHF1

Intron

2

CP068274.2:167 658 247

364

LINE (L1)

MARCHF1

Intron

2

CP068274.2:168 615 609

326

SINE (Alu)

KLHL2

Intron

2

CP068274.2:173 273 624

300

SINE (Alu)

LOC105377530

Intron

2

CP068274.2:176 567 723

316

SINE (Alu)

GALNT7

Intron

2

CP068274.2:177 952 805

327

SINE (Alu)

LOC105377549

Promoter

2

CP068274.2:177 952 805

327

SINE (Alu)

LOC105377549

Intron

2

CP068274.2:180 931 723

327

SINE (Alu)

AGA-DT

Intron

2

CP068274.2:183 743 146

134

SINE (Alu)

LOC105377567

Intron

2

CP068274.2:183 970 626

314

SINE (Alu)

LOC105377567

Intron

2

CP068274.2:184 287 159

177

Retroposon (SVA)

LOC105377567

Intron

2

CP068274.2:188 770 995

325

SINE (Alu)

CFAP96

Intron

2

CP068274.2:189 838 124

54

SINE (Alu)

F11-AS1

Intron

2

CP068274.2:191 339 483

115

Retroposon (SVA)

LOC124900881

Intron

2

CP068275.2:1 238 775

63

LTR (ERV1)

CNTN6

Intron

2

CP068275.2:2 123 290

333

SINE (Alu)

CNTN4

Intron

2

CP068275.2:2 584 962

312

SINE (Alu)

CNTN4

Intron

2

CP068275.2:2 766 318

327

SINE (Alu)

CNTN4

Intron

2

CP068275.2:7 082 643

330

SINE (Alu)

GRM7

Intron

2

CP068275.2:7 119 340

309

SINE (Alu)

GRM7

Intron

2

CP068275.2:11 482 481

294

Retroposon (SVA)

ATG7

Intron

2

CP068275.2:12 308 634

309

SINE (Alu)

PPARG

Intron

2

CP068275.2:17 692 738

322

SINE (Alu)

TBC1D5

Intron

2

CP068275.2:17 706 749

147

Retroposon (SVA)

TBC1D5

Intron

2

CP068275.2:25 239 836

323

SINE (Alu)

RARB

Intron

2

CP068275.2:25 252 730

71

LINE (L1)

RARB

Intron

2

CP068275.2:28 128 297

325

SINE (Alu)

LOC105377008

Intron

2

CP068275.2:29 475 804

159

LTR (ERV1)

RBMS3

Intron

2

CP068275.2:29 581 534

322

SINE (Alu)

RBMS3

Intron

2

CP068275.2:32 005 645

94

LTR (ERV1)

OSBPL10

Intron

2

CP068275.2:32 394 273

251

SINE (Alu)

CMTM7

Intron

2

CP068275.2:33 513 430

882

LINE (L1)

CLASP2

Intron

2

CP068275.2:35 305 680

324

SINE (Alu)

LOC101928135

Intron

2

CP068275.2:36 454 965

138

LTR (ERV1)

STAC

Intron

2

CP068275.2:37 564 342

320

SINE (Alu)

ITGA9

Intron

2

CP068275.2:37 883 215

341

SINE (Alu)

CTDSPL

Intron

2

CP068275.2:38 085 680

299

Retroposon (SVA)

DLEC1

Intron

2

CP068275.2:38 119 250

134

SINE (Alu)

DLEC1

Intron

2

CP068275.2:41 321 655

61

Retroposon (SVA)

ULK4

Intron

2

CP068275.2:45 150 159

318

SINE (Alu)

CDCP1

Intron

2

CP068275.2:45 517 532

317

SINE (Alu)

LARS2

Intron

2

CP068275.2:45 666 947

329

SINE (Alu)

LIMD1

Intron

2

CP068275.2:46 636 445

321

SINE (Alu)

FAM240A

Intron

2

CP068275.2:47 760 449

318

SINE (Alu)

SMARCC1

Intron

2

CP068275.2:48 737 575

324

SINE (Alu)

IP6K2

Intron

2

CP068275.2:50 054 724

268

SINE (Alu)

RBM6

Intron

2

CP068275.2:50 341 806

97

Retroposon (SVA)

HYAL1

Intron

2

CP068275.2:50 871 694

344

SINE (Alu)

DOCK3

Intron

2

CP068275.2:51 280 097

126

Retroposon (SVA)

DOCK3

Intron

2

CP068275.2:57 489 207

486

LTR (ERV1)

DNAH12

Intron

2

CP068275.2:57 618 834

310

SINE (Alu)

PDE12

Intron

2

CP068275.2:59 950 161

108

SINE (Alu)

FHIT

Intron

2

CP068275.2:61 714 843

178

Retroposon (SVA)

PTPRG

Intron

2

CP068275.2:61 714 843

280

Retroposon (SVA)

PTPRG

Intron

2

CP068275.2:63 598 884

312

SINE (Alu)

SYNPR

Intron

2

CP068275.2:66 758 044

136

SINE (Alu)

LOC105377142

Intron

2

CP068275.2:70 402 714

331

SINE (Alu)

SAMMSON

Intron

2

CP068275.2:71 229 921

299

SINE (Alu)

FOXP1

Intron

2

CP068275.2:79 818 450

330

SINE (Alu)

ROBO1

Intron

2

CP068275.2:80 595 596

6 100

LINE (L1)

LOC105377177

Intron

2

CP068275.2:82 376 966

107

LTR (ERV1)

LINC02008

Intron

2

CP068275.2:103 397 456

327

SINE (Alu)

ADGRG7

Intron

2

CP068275.2:104 176 252

323

SINE (Alu)

SENP7

Intron

2

CP068275.2:104 197 720

134

SINE (Alu)

SENP7

Intron

2

CP068275.2:110 007 621

315

SINE (Alu)

DUBR

Intron

2

CP068275.2:114 228 328

335

SINE (Alu)

LOC105374039

Intron

2

CP068275.2:114 926 706

49

LINE (L1)

SLC9C1

Intron

2

CP068275.2:118 384 394

329

SINE (Alu)

GAP43

Intron

2

CP068275.2:121 745 142

319

SINE (Alu)

IGSF11

Intron

2

CP068275.2:124 569 921

314

SINE (Alu)

EAF2

Intron

2

CP068275.2:125 800 969

326

SINE (Alu)

PDIA5

Intron

2

CP068275.2:127 093 813

499

Retroposon (SVA)

KALRN

Intron

2

CP068275.2:127 413 483

316

SINE (Alu)

KALRN

Intron

2

CP068275.2:128 503 270

308

SINE (Alu)

TUBB8P11

Intron

2

CP068275.2:129 372 854

325

SINE (Alu)

TXNRD3

Intron

2

CP068275.2:132 210 422

310

SINE (Alu)

IFT122

Intron

2

CP068275.2:145 488 419

314

SINE (Alu)

TRPC1

Intron

2

CP068275.2:145 833 710

401

Retroposon (SVA)

LOC105374138

Intron

2

CP068275.2:148 980 021

50

LTR (ERV1)

PLSCR4

Intron

2

CP068275.2:151 234 711

261

LINE (L1)

LOC105374150

Intron

2

CP068275.2:152 131 585

98

Retroposon (SVA)

TM4SF1-AS1

Intron

2

CP068275.2:152 131 588

850

Retroposon (SVA)

TM4SF1-AS1

Intron

2

CP068275.2:152 131 779

254

Retroposon (SVA)

TM4SF1-AS1

Intron

2

CP068275.2:158 441 944

179

SINE (Alu)

PLCH1

Intron

2

CP068275.2:160 210 863

323

SINE (Alu)

PTX3

Promoter

2

CP068275.2:160 210 863

323

SINE (Alu)

VEPH1

Intron

2

CP068275.2:161 020 241

339

SINE (Alu)

RSRC1

Intron

2

CP068275.2:163 320 669

161

SINE (Alu)

KPNA4

Intron

2

CP068275.2:171 265 169

319

SINE (Alu)

EGFEM1P

Intron

2

CP068275.2:174 692 725

313

SINE (Alu)

LOC105374218

Intron

2

CP068275.2:175 390 208

142

SINE (Alu)

SLC31A1P1

Promoter

2

CP068275.2:175 468 147

318

SINE (Alu)

NCEH1

Intron

2

CP068275.2:177 480 228

322

SINE (Alu)

NAALADL2

Intron

2

CP068275.2:181 925 312

67

Retroposon (SVA)

PIK3CA-DT

Intron

2

CP068275.2:190 057 581

329

SINE (Alu)

MASP1

Intron

2

CP068275.2:200 460 370

71

SINE (Alu)

RUBCN

Intron

2

CP068276.2:1 142 774

282

SINE (Alu)

SNTG2

Intron

2

CP068276.2:1 468 423

331

SINE (Alu)

TPO

Intron

2

CP068276.2:10 715 943

158

LINE (L2)

NOL10

Intron

2

CP068276.2:15 643 219

126

Retroposon (SVA)

DDX1

Intron

2

CP068276.2:25 039 473

315

SINE (Alu)

DNAJC27-AS1

Intron

2

CP068276.2:27 874 359

323

SINE (Alu)

RBKS

Intron

2

CP068276.2:28 174 642

325

SINE (Alu)

BABAM2

Intron

2

CP068276.2:32 189 307

322

SINE (Alu)

SPAST

Intron

2

CP068276.2:34 078 377

317

SINE (Alu)

LINC01317

Intron

2

CP068276.2:40 395 538

329

SINE (Alu)

SLC8A1

Intron

2

CP068276.2:44 594 088

225

Retroposon (SVA)

CAMKMT

Intron

1

CP068276.2:44 604 010

317

SINE (Alu)

CAMKMT

Intron

2

CP068276.2:47 587 887

2 883

Retroposon (SVA)

MSH2

Intron

2

CP068276.2:47 961 973

134

SINE (Alu)

LOC105374591

Intron

2

CP068276.2:48 560 596

2 686

Retroposon (SVA)

STON1-GTF2A1L

Intron

2

CP068276.2:50 018 018

133

SINE (Alu)

NRXN1

Intron

2

CP068276.2:51 765 172

311

SINE (Alu)

NRXN1-DT

Intron

2

CP068276.2:53 161 221

64

LINE (L1)

LOC105369165

Intron

2

CP068276.2:54 460 543

253

SINE (Alu)

SPTBN1

Promoter

2

CP068276.2:54 460 543

253

SINE (Alu)

SPTBN1

Intron

2

CP068276.2:56 143 345

319

SINE (Alu)

LOC105374690

Intron

2

CP068276.2:56 642 726

165

SINE (Alu)

LOC101927213

Intron

2

CP068276.2:62 280 995

317

SINE (Alu)

LOC105374761

Intron

2

CP068276.2:63 716 688

81

SINE (Alu)

WDPCP

Intron

2

CP068276.2:65 116 309

306

SINE (Alu)

RAB1A

Intron

2

CP068276.2:69 529 836

325

SINE (Alu)

AAK1

Intron

2

CP068276.2:74 070 032

351

Retroposon (SVA)

TET3

Intron

2

CP068276.2:74 292 982

328

SINE (Alu)

SLC4A5

Intron

2

CP068276.2:80 542 014

270

SINE (Alu)

CTNNA2

Intron

2

CP068276.2:81 704 371

312

SINE (Alu)

LOC102724542

Intron

2

CP068276.2:81 714 488

335

SINE (Alu)

LOC102724542

Intron

2

CP068276.2:88 741 786

3 045

LINE (L1)

RPIA

Intron

2

CP068276.2:98 423 896

304

SINE (Alu)

TMEM131

Intron

2

CP068276.2:102 198 725

316

SINE (Alu)

MAP4K4

Intron

2

CP068276.2:103 165 040

333

SINE (Alu)

SLC9A2

Intron

2

CP068276.2:107 771 785

321

SINE (Alu)

LINC01789

Intron

2

CP068276.2:112 385 913

326

SINE (Alu)

MERTK

Intron

2

CP068276.2:128 316 576

322

SINE (Alu)

AMMECR1L

Intron

2

CP068276.2:131 521 066

319

SINE (Alu)

FAM168B

Intron

2

CP068276.2:133 554 578

318

SINE (Alu)

NCKAP5

Intron

2

CP068276.2:141 752 388

57

LINE (L1)

LRP1B

Intron

2

CP068276.2:141 802 818

332

SINE (Alu)

LRP1B

Intron

2

CP068276.2:148 342 955

298

SINE (Alu)

ACVR2A

Intron

2

CP068276.2:150 220 893

319

SINE (Alu)

MMADHC-DT

Intron

2

CP068276.2:153 756 655

321

SINE (Alu)

GALNT13

Intron

2

CP068276.2:156 904 306

49

Retroposon (SVA)

GPD2

Intron

2

CP068276.2:158 030 254

326

SINE (Alu)

ACVR1C

Intron

2

CP068276.2:159 710 998

156

SINE (Alu)

WDSUB1

Intron

2

CP068276.2:160 457 569

319

SINE (Alu)

PLA2R1

Intron

2

CP068276.2:163 278 969

310

SINE (Alu)

KCNH7

Intron

2

CP068276.2:169 207 167

75

SINE (Alu)

CERS6

Intron

2

CP068276.2:169 505 778

318

SINE (Alu)

ABCB11

Intron

2

CP068276.2:174 714 647

320

SINE (Alu)

OLA1

Intron

2

CP068276.2:175 359 957

318

SINE (Alu)

CHN1

Intron

2

CP068276.2:177 936 293

332

SINE (Alu)

AGPS

Intron

2

CP068276.2:177 969 024

339

SINE (Alu)

AGPS

Intron

2

CP068276.2:181 505 642

310

SINE (Alu)

UBE2E3

Intron

2

CP068276.2:181 887 945

307

SINE (Alu)

LINC01934

Intron

2

CP068276.2:182 940 161

312

SINE (Alu)

PDE1A

Intron

2

CP068276.2:187 840 213

316

SINE (Alu)

CALCRL-AS1

Intron

2

CP068276.2:188 787 065

297

SINE (Alu)

GULP1

Intron

2

CP068276.2:191 887 362

478

Retroposon (SVA)

MYO1B

Intron

2

CP068276.2:196 356 056

274

SINE (Alu)

DNAH7

Intron

2

CP068276.2:198 513 690

136

SINE (Alu)

PLCL1

Intron

2

CP068276.2:201 256 725

968

LINE (L1)

AOX3P-AOX2P

Intron

2

CP068276.2:201 765 374

3 154

Retroposon (SVA)

CASP8

Intron

2

CP068276.2:202 258 175

325

SINE (Alu)

ALS2

Intron

2

CP068276.2:207 594 378

322

SINE (Alu)

KLF7

Intron

2

CP068276.2:208 081 694

315

SINE (Alu)

METTL21A

Intron

2

CP068276.2:209 066 826

324

SINE (Alu)

LOC101927960

Intron

2

CP068276.2:213 593 201

342

SINE (Alu)

IKZF2

Intron

2

CP068276.2:214 127 683

244

SINE (Alu)

SPAG16

Intron

2

CP068276.2:214 395 182

306

SINE (Alu)

SPAG16

Intron

2

CP068276.2:215 319 684

77

Retroposon (SVA)

SNHG31

Intron

2

CP068276.2:215 369 783

158

SINE (Alu)

SNHG31

Intron

2

CP068276.2:216 169 155

326

SINE (Alu)

LOC102724861

Intron

2

CP068276.2:216 174 633

133

SINE (Alu)

LOC102724861

Intron

1

CP068276.2:217 798 533

319

SINE (Alu)

DIRC3-AS1

Intron

2

CP068276.2:219 198 425

326

SINE (Alu)

TTLL4

Intron

2

CP068276.2:224 009 725

146

SINE (Alu)

LOC105373907

Intron

2

CP068276.2:226 634 805

245

SINE (Alu)

LOC646736

Intron

2

CP068276.2:233 687 447

149

SINE (Alu)

INPP5D

Intron

2

CP068276.2:234 212 774

50

Retroposon (SVA)

UGT1A8

Intron

2

CP068277.2:1 320 292

328

SINE (Alu)

GNB1

Intron

2

CP068277.2:6 326 450

177

SINE (Alu)

CAMTA1

Promoter

2

CP068277.2:6 326 450

177

SINE (Alu)

CAMTA1

Intron

2

CP068277.2:7 334 478

181

SINE (Alu)

PER3

Intron

2

CP068277.2:7 919 417

313

SINE (Alu)

RERE

Intron

2

CP068277.2:14 607 684

135

SINE (Alu)

TMEM51

Intron

2

CP068277.2:17 172 541

322

SINE (Alu)

PADI4

Intron

2

CP068277.2:20 992 773

316

SINE (Alu)

EIF4G3

Intron

2

CP068277.2:26 742 097

320

SINE (Alu)

NUDC

Intron

2

CP068277.2:28 942 968

322

SINE (Alu)

EPB41

Intron

2

CP068277.2:37 704 316

337

SINE (Alu)

MTF1

Intron

2

CP068277.2:38 352 287

74

SINE (Alu)

LOC105378657

Intron

2

CP068277.2:43 651 450

2 612

Retroposon (SVA)

ST3GAL3

Intron

2

CP068277.2:45 201 578

326

SINE (Alu)

MUTYH

Intron

2

CP068277.2:46 090 577

335

SINE (Alu)

LURAP1

Intron

2

CP068277.2:50 326 587

333

SINE (Alu)

FAF1

Intron

2

CP068277.2:56 248 453

3 850

LINE (L1)

LOC124905710

Intron

2

CP068277.2:56 301 172

313

SINE (Alu)

LOC124905710

Intron

2

CP068277.2:57 484 949

211

SINE (Alu)

DAB1

Intron

2

CP068277.2:59 284 566

319

SINE (Alu)

FGGY

Intron

2

CP068277.2:61 803 773

316

SINE (Alu)

PATJ

Intron

2

CP068277.2:64 759 246

333

SINE (Alu)

JAK1

Intron

2

CP068277.2:65 321 913

268

LINE (L1)

LEPR

Intron

2

CP068277.2:65 467 967

315

SINE (Alu)

LEPR

Intron

2

CP068277.2:66 613 403

328

SINE (Alu)

SGIP1

Intron

2

CP068277.2:69 355 344

307

SINE (Alu)

LOC105378789

Intron

2

CP068277.2:69 502 005

149

LINE (L1)

LRRC7

Intron

2

CP068277.2:74 568 854

3 708

LINE (L1)

CRYZ

Intron

2

CP068277.2:76 228 904

312

SINE (Alu)

ST6GALNAC3

Intron

2

CP068277.2:76 950 407

328

SINE (Alu)

PIGK

Intron

2

CP068277.2:77 006 803

316

SINE (Alu)

PIGK

Intron

2

CP068277.2:77 980 174

317

SINE (Alu)

LOC107984997

Intron

2

CP068277.2:81 683 953

322

SINE (Alu)

ADGRL2

Intron

2

CP068277.2:82 984 354

1 742

LINE (L1)

LINC01362

Intron

2

CP068277.2:86 739 975

127

Retroposon (SVA)

SELENOF

Intron

2

CP068277.2:89 748 218

268

SINE (Alu)

LRRC8D

Intron

2

CP068277.2:99 934 205

314

SINE (Alu)

SASS6

Intron

2

CP068277.2:107 637 360

308

SINE (Alu)

VAV3

Intron

2

CP068277.2:110 016 088

218

SINE (Alu)

AHCYL1

Intron

2

CP068277.2:111 310 361

61

LINE (L1)

CHIA

Intron

2

CP068277.2:111 595 921

320

SINE (Alu)

RAP1A

Intron

2

CP068277.2:114 512 654

311

SINE (Alu)

TRIM33

Intron

2

CP068277.2:114 670 214

304

SINE (Alu)

DENND2C

Intron

2

CP068277.2:117 439 865

79

Retroposon (SVA)

MAN1A2

Intron

2

CP068277.2:117 557 840

221

SINE (Alu)

VPS25P1

Promoter

2

CP068277.2:152 298 029

256

LINE (L1)

SPRR2G

Intron

2

CP068277.2:155 092 707

320

SINE (Alu)

ARHGEF2

Intron

2

CP068277.2:156 402 821

137

SINE (Alu)

LOC105371456

Intron

2

CP068277.2:165 036 498

272

SINE (Alu)

ALDH9A1

Intron

2

CP068277.2:166 450 102

62

LTR (ERVL)

STYXL2

Intron

2

CP068277.2:170 038 643

96

SINE (Alu)

PRRX1

Intron

2

CP068277.2:178 877 823

353

SINE (Alu)

AXDND1

Intron

2

CP068277.2:180 056 924

281

LINE (L1)

XPR1

Intron

2

CP068277.2:181 811 277

323

SINE (Alu)

RGSL1

Intron

2

CP068277.2:188 371 799

328

SINE (Alu)

LINC01035

Intron

2

CP068277.2:191 194 817

318

SINE (Alu)

LINC02770

Intron

2

CP068277.2:196 178 912

323

SINE (Alu)

CFHR4

Intron

2

CP068277.2:203 533 894

317

SINE (Alu)

PLEKHA6

Intron

2

CP068277.2:209 360 883

317

SINE (Alu)

SYT14

Intron

2

CP068277.2:209 987 125

121

SINE (Alu)

LOC105372901

Intron

2

CP068277.2:210 357 650

119

Retroposon (SVA)

KCNH1

Intron

1

CP068277.2:211 713 734

85

SINE (Alu)

LINC02771

Intron

2

CP068277.2:211 837 436

315

SINE (Alu)

ATF3

Intron

2

CP068277.2:214 261 398

54

LTR (ERVL)

KCNK2

Intron

2

CP068277.2:214 351 830

317

SINE (Alu)

KCNK2

Intron

2

CP068277.2:216 139 844

330

SINE (Alu)

ESRRG

Intron

2

CP068277.2:217 069 272

325

SINE (Alu)

SPATA17

Intron

2

CP068277.2:218 986 191

318

SINE (Alu)

LOC105372926

Intron

2

CP068277.2:220 020 709

318

SINE (Alu)

MTARC2

Intron

2

CP068277.2:221 722 389

173

Retroposon (SVA)

LOC124905750

Intron

1

CP068277.2:221 931 096

328

SINE (Alu)

AIDA

Intron

2

CP068277.2:222 361 090

330

SINE (Alu)

TLR5

Intron

2

CP068277.2:226 463 590

323

SINE (Alu)

CDC42BPA

Intron

2

CP068277.2:226 503 107

134

SINE (Alu)

CDC42BPA

Intron

2

CP068277.2:230 329 881

305

SINE (Alu)

TTC13

Intron

2

CP068277.2:232 592 710

314

SINE (Alu)

PCNX2

Intron

2

CP068277.2:233 657 577

51

Retroposon (SVA)

SLC35F3

Intron

2

CP068277.2:235 777 228

2 105

Retroposon (SVA)

EDARADD

Intron

2

CP068277.2:239 055 414

282

LINE (L1)

CHRM3

Intron

2

CP068277.2:242 625 619

323

SINE (Alu)

CEP170

Intron

2

CP068277.2:245 851 672

318

SINE (Alu)

SMYD3

Intron

2

CP068277.2:246 075 792

133

SINE (Alu)

CNST

Intron

2

CP068277.2:246 295 973

301

SINE (Alu)

AHCTF1

Intron

2

CP068277.2:981 392

121

SINE (Alu)

SSU72

Intron

2

2.2 Class II Elements

2.2.1 Distribution

A) Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 12 rows.

Position

Length

Type

Gene

Annotation

Occurrences

CP068258.2:1 634 244

147

DNA (hAT)

SIRPB1

Intron

1

CP068258.2:55 000 758

56

DNA (hAT)

TSHZ2

Intron

1

CP068259.2:41 706 549

82

DNA (hAT)

NFKBIB

Intron

2

CP068262.2:71 260 009

200

DNA (TcMar)

LINC00922

Intron

2

CP068268.2:29 625 324

54

DNA (TcMar)

SVIL

Intron

2

CP068268.2:35 402 487

112

DNA (TcMar)

CCNY

Intron

2

CP068269.2:19 135 332

63

DNA (TcMar)

PLIN2

Intron

2

CP068270.2:1 952 883

263

DNA (hAT)

LOC105377781

Intron

2

CP068270.2:8 712 615

74

DNA (TcMar)

XKR6

Intron

2

CP068270.2:89 463 045

96

DNA (hAT)

LOC105375630

Intron

2

CP068272.2:167 189 769

54

DNA (TcMar)

PDE10A

Intron

1

CP068277.2:239 923 756

176

DNA (hAT)

GREM2

Intron

2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

  • 1 472 TE deletions have been found, adding up to 2 861 occurrences among cases.
  • These deletions have a mean prevalence per sample of 1.9 ± 0.23 (median of 2).
  • The deletion length is in the range of 304-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 504, for a deleted ERVK sequence.

3.1 Allele frequency

  • The mean AF for deletions is 0.78 ± 0.25 (median of 0.75).
  • With 727 (727 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 33 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is glucuronosyltransferase activity (0.0001476274), and the highest (among the lowest 10) is phosphatidylinositol binding (0.003421468). The ratio is 23.17637, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0015020

glucuronosyltransferase activity

10/738

36/20758

3.336e-07

0.0001476

0.0001339

10

0.01355

GO:0071889

14-3-3 protein binding

10/738

37/20758

4.427e-07

0.0001476

0.0001339

10

0.01355

GO:0005543

phospholipid binding

41/738

495/20758

5.114e-07

0.0001476

0.0001339

41

0.05556

GO:0046979

TAP2 binding

7/738

20/20758

3.608e-06

0.0007812

0.0007084

7

0.009485

GO:0005516

calmodulin binding

21/738

210/20758

2.055e-05

0.003144

0.002851

21

0.02846

GO:0005216

ion channel activity

36/738

480/20758

2.27e-05

0.003144

0.002851

36

0.04878

GO:0030881

beta-2-microglobulin binding

7/738

26/20758

2.541e-05

0.003144

0.002851

7

0.009485

GO:0051959

dynein light intermediate chain binding

7/738

27/20758

3.326e-05

0.003421

0.003102

7

0.009485

GO:0008569

minus-end-directed microtubule motor activity

6/738

19/20758

3.61e-05

0.003421

0.003102

6

0.00813

GO:0035091

phosphatidylinositol binding

25/738

288/20758

3.951e-05

0.003421

0.003102

25

0.03388

GO:0046978

TAP1 binding

7/738

29/20758

5.494e-05

0.004325

0.003922

7

0.009485

GO:0016757

glycosyltransferase activity

24/738

289/20758

0.0001119

0.008075

0.007322

24

0.03252

GO:0008194

UDP-glycosyltransferase activity

16/738

157/20758

0.0001548

0.01031

0.00935

16

0.02168

GO:0016758

hexosyltransferase activity

19/738

210/20758

0.0001903

0.01061

0.009625

19

0.02575

GO:0005080

protein kinase C binding

9/738

58/20758

0.0001932

0.01061

0.009625

9

0.0122

GO:0045296

cadherin binding

27/738

357/20758

0.0002038

0.01061

0.009625

27

0.03659

GO:0042578

phosphoric ester hydrolase activity

29/738

396/20758

0.0002084

0.01061

0.009625

29

0.0393

GO:0005096

GTPase activator activity

24/738

304/20758

0.0002405

0.01157

0.01049

24

0.03252

GO:0046873

metal ion transmembrane transporter activity

32/738

466/20758

0.0003188

0.01453

0.01317

32

0.04336

GO:0003779

actin binding

32/738

471/20758

0.0003839

0.01614

0.01464

32

0.04336

GO:0022836

gated channel activity

27/738

372/20758

0.0003914

0.01614

0.01464

27

0.03659

GO:0005085

guanyl-nucleotide exchange factor activity

20/738

245/20758

0.0005051

0.01924

0.01745

20

0.0271

GO:0005261

cation channel activity

26/738

360/20758

0.0005361

0.01924

0.01745

26

0.03523

GO:0015085

calcium ion transmembrane transporter activity

14/738

142/20758

0.0005486

0.01924

0.01745

14

0.01897

GO:0005262

calcium channel activity

13/738

126/20758

0.0005554

0.01924

0.01745

13

0.01762

GO:0098632

cell-cell adhesion mediator activity

8/738

54/20758

0.0006015

0.02004

0.01817

8

0.01084

GO:0005001

transmembrane receptor protein tyrosine phosphatase activity

5/738

21/20758

0.0007095

0.02194

0.0199

5

0.006775

GO:0019198

transmembrane receptor protein phosphatase activity

5/738

21/20758

0.0007095

0.02194

0.0199

5

0.006775

GO:0003774

cytoskeletal motor activity

12/738

118/20758

0.001017

0.03037

0.02754

12

0.01626

GO:0070679

inositol 1,4,5 trisphosphate binding

4/738

14/20758

0.001193

0.03443

0.03122

4

0.00542

GO:0046977

TAP binding

7/738

50/20758

0.001842

0.05075

0.04602

7

0.009485

GO:0098631

cell adhesion mediator activity

8/738

64/20758

0.001875

0.05075

0.04602

8

0.01084

GO:0046703

natural killer cell lectin-like receptor binding

5/738

27/20758

0.00236

0.06193

0.05615

5

0.006775

GO:0016791

phosphatase activity

21/738

300/20758

0.002573

0.06445

0.05844

21

0.02846

GO:0015385

sodium:proton antiporter activity

4/738

17/20758

0.002605

0.06445

0.05844

4

0.00542

GO:0015278

calcium-release channel activity

4/738

18/20758

0.003256

0.07663

0.06948

4

0.00542

GO:0045499

chemorepellent activity

5/738

29/20758

0.003274

0.07663

0.06948

5

0.006775

GO:1901981

phosphatidylinositol phosphate binding

15/738

191/20758

0.003511

0.08001

0.07255

15

0.02033

GO:0003777

microtubule motor activity

8/738

72/20758

0.003959

0.08578

0.07779

8

0.01084

GO:0004675

transmembrane receptor protein serine/threonine kinase activity

4/738

19/20758

0.004009

0.08578

0.07779

4

0.00542

GO:0004721

phosphoprotein phosphatase activity

15/738

194/20758

0.004061

0.08578

0.07779

15

0.02033

GO:0005217

intracellular ligand-gated ion channel activity

5/738

31/20758

0.004418

0.08969

0.08133

5

0.006775

GO:0032356

oxidized DNA binding

3/738

10/20758

0.004454

0.08969

0.08133

3

0.004065

GO:0016798

hydrolase activity, acting on glycosyl bonds

12/738

142/20758

0.004814

0.09475

0.08592

12

0.01626

GO:0140828

metal cation:monoatomic cation antiporter activity

5/738

34/20758

0.00663

0.1276

0.1157

5

0.006775

GO:0051139

metal cation:proton antiporter activity

4/738

22/20758

0.006955

0.1309

0.1187

4

0.00542

GO:0044325

transmembrane transporter binding

11/738

131/20758

0.00712

0.1312

0.119

11

0.01491

GO:0001786

phosphatidylserine binding

7/738

64/20758

0.007478

0.1349

0.1223

7

0.009485

GO:0045505

dynein intermediate chain binding

5/738

37/20758

0.00952

0.1622

0.1471

5

0.006775

GO:0008143

poly(A) binding

4/738

24/20758

0.009552

0.1622

0.1471

4

0.00542

GO:0030215

semaphorin receptor binding

4/738

24/20758

0.009552

0.1622

0.1471

4

0.00542

GO:0022843

voltage-gated cation channel activity

12/738

156/20758

0.009962

0.1659

0.1504

12

0.01626

GO:0004674

protein serine/threonine kinase activity

27/738

470/20758

0.01025

0.1675

0.1519

27

0.03659

GO:0016799

hydrolase activity, hydrolyzing N-glycosyl compounds

5/738

38/20758

0.01065

0.1708

0.1549

5

0.006775

GO:0097110

scaffold protein binding

7/738

69/20758

0.01116

0.1758

0.1594

7

0.009485

GO:0051018

protein kinase A binding

6/738

55/20758

0.01307

0.2021

0.1833

6

0.00813

GO:0030165

PDZ domain binding

8/738

89/20758

0.01385

0.21

0.1904

8

0.01084

GO:0099604

ligand-gated calcium channel activity

4/738

27/20758

0.01451

0.21

0.1904

4

0.00542

GO:0004029

aldehyde dehydrogenase (NAD+) activity

3/738

15/20758

0.01479

0.21

0.1904

3

0.004065

GO:0030553

cGMP binding

3/738

15/20758

0.01479

0.21

0.1904

3

0.004065

GO:0034236

protein kinase A catalytic subunit binding

3/738

15/20758

0.01479

0.21

0.1904

3

0.004065

GO:0015079

potassium ion transmembrane transporter activity

12/738

166/20758

0.01571

0.2195

0.199

12

0.01626

GO:0051117

ATPase binding

8/738

92/20758

0.01666

0.229

0.2077

8

0.01084

GO:0003953

NAD+ nucleosidase activity

3/738

16/20758

0.01773

0.2292

0.2078

3

0.004065

GO:0015386

potassium:proton antiporter activity

3/738

16/20758

0.01773

0.2292

0.2078

3

0.004065

GO:0050135

NAD(P)+ nucleosidase activity

3/738

16/20758

0.01773

0.2292

0.2078

3

0.004065

GO:0061809

NAD+ nucleotidase, cyclic ADP-ribose generating

3/738

16/20758

0.01773

0.2292

0.2078

3

0.004065

GO:0004725

protein tyrosine phosphatase activity

9/738

112/20758

0.01845

0.2321

0.2105

9

0.0122

GO:0034593

phosphatidylinositol bisphosphate phosphatase activity

4/738

29/20758

0.01857

0.2321

0.2105

4

0.00542

GO:0008081

phosphoric diester hydrolase activity

8/738

95/20758

0.01985

0.2321

0.2105

8

0.01084

GO:0015276

ligand-gated ion channel activity

11/738

152/20758

0.02006

0.2321

0.2105

11

0.01491

GO:0022834

ligand-gated channel activity

11/738

152/20758

0.02006

0.2321

0.2105

11

0.01491

GO:0005244

voltage-gated ion channel activity

14/738

213/20758

0.02042

0.2321

0.2105

14

0.01897

GO:0022832

voltage-gated channel activity

14/738

213/20758

0.02042

0.2321

0.2105

14

0.01897

GO:0051393

alpha-actinin binding

4/738

30/20758

0.02084

0.2321

0.2105

4

0.00542

GO:0070717

poly-purine tract binding

4/738

30/20758

0.02084

0.2321

0.2105

4

0.00542

GO:0004030

aldehyde dehydrogenase [NAD(P)+] activity

3/738

17/20758

0.02098

0.2321

0.2105

3

0.004065

GO:0008484

sulfuric ester hydrolase activity

3/738

17/20758

0.02098

0.2321

0.2105

3

0.004065

GO:0015298

solute:cation antiporter activity

5/738

45/20758

0.02118

0.2321

0.2105

5

0.006775

GO:0072341

modified amino acid binding

8/738

97/20758

0.02221

0.2404

0.218

8

0.01084

GO:0017128

phospholipid scramblase activity

3/738

18/20758

0.02452

0.2588

0.2347

3

0.004065

GO:0030275

LRR domain binding

3/738

18/20758

0.02452

0.2588

0.2347

3

0.004065

GO:1902936

phosphatidylinositol bisphosphate binding

9/738

118/20758

0.02496

0.2588

0.2347

9

0.0122

GO:0140303

intramembrane lipid transporter activity

5/738

47/20758

0.0251

0.2588

0.2347

5

0.006775

GO:0017124

SH3 domain binding

10/738

139/20758

0.02682

0.2732

0.2478

10

0.01355

GO:0004115

3',5'-cyclic-AMP phosphodiesterase activity

3/738

19/20758

0.02837

0.2755

0.2499

3

0.004065

GO:0030169

low-density lipoprotein particle binding

3/738

19/20758

0.02837

0.2755

0.2499

3

0.004065

GO:0005154

epidermal growth factor receptor binding

4/738

33/20758

0.02864

0.2755

0.2499

4

0.00542

GO:0005451

monovalent cation:proton antiporter activity

4/738

33/20758

0.02864

0.2755

0.2499

4

0.00542

GO:0015299

solute:proton antiporter activity

4/738

33/20758

0.02864

0.2755

0.2499

4

0.00542

GO:0005249

voltage-gated potassium channel activity

8/738

102/20758

0.02896

0.2756

0.2499

8

0.01084

GO:0099094

ligand-gated cation channel activity

9/738

122/20758

0.03012

0.2835

0.2571

9

0.0122

GO:0005548

phospholipid transporter activity

6/738

67/20758

0.03159

0.2942

0.2667

6

0.00813

GO:0001972

retinoic acid binding

3/738

20/20758

0.03251

0.2964

0.2687

3

0.004065

GO:0052745

inositol phosphate phosphatase activity

3/738

20/20758

0.03251

0.2964

0.2687

3

0.004065

GO:0106310

protein serine kinase activity

21/738

383/20758

0.03372

0.3042

0.2758

21

0.02846

GO:0005251

delayed rectifier potassium channel activity

4/738

35/20758

0.03467

0.3096

0.2807

4

0.00542

GO:0005267

potassium channel activity

9/738

126/20758

0.03598

0.3137

0.2845

9

0.0122

GO:0015125

bile acid transmembrane transporter activity

3/738

21/20758

0.03695

0.3137

0.2845

3

0.004065

GO:0019200

carbohydrate kinase activity

3/738

21/20758

0.03695

0.3137

0.2845

3

0.004065

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of natural killer cell activation (1.187899e-09), and the highest (among the lowest 10) is negative regulation of secretion by cell (0.0002284739). The ratio is 192334.51, i.e., they differ in 5 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0032815

negative regulation of natural killer cell activation

12/728

20/21069

2.589e-13

1.188e-09

1.107e-09

12

0.01648

GO:0043321

regulation of natural killer cell degranulation

7/728

10/21069

6.264e-09

9.58e-06

8.924e-06

7

0.009615

GO:0043323

positive regulation of natural killer cell degranulation

7/728

10/21069

6.264e-09

9.58e-06

8.924e-06

7

0.009615

GO:0051048

negative regulation of secretion

25/728

203/21069

3.923e-08

4.194e-05

3.906e-05

25

0.03434

GO:0010975

regulation of neuron projection development

41/728

468/21069

5.351e-08

4.194e-05

3.906e-05

41

0.05632

GO:0052695

cellular glucuronidation

9/728

24/21069

5.484e-08

4.194e-05

3.906e-05

9

0.01236

GO:0032814

regulation of natural killer cell activation

13/728

59/21069

8.398e-08

5.505e-05

5.127e-05

13

0.01786

GO:0006063

uronic acid metabolic process

9/728

29/21069

3.597e-07

0.0001833

0.0001708

9

0.01236

GO:0019585

glucuronate metabolic process

9/728

29/21069

3.597e-07

0.0001833

0.0001708

9

0.01236

GO:1903531

negative regulation of secretion by cell

21/728

171/21069

4.98e-07

0.0002285

0.0002128

21

0.02885

GO:0043320

natural killer cell degranulation

7/728

17/21069

8.21e-07

0.0003424

0.000319

7

0.009615

GO:0016358

dendrite development

26/728

262/21069

1.52e-06

0.0005811

0.0005413

26

0.03571

GO:0045920

negative regulation of exocytosis

10/728

44/21069

1.952e-06

0.0006888

0.0006417

10

0.01374

GO:0043301

negative regulation of leukocyte degranulation

7/728

20/21069

2.989e-06

0.0009794

0.0009123

7

0.009615

GO:0002725

negative regulation of T cell cytokine production

7/728

21/21069

4.35e-06

0.001286

0.001198

7

0.009615

GO:0048813

dendrite morphogenesis

18/728

150/21069

4.486e-06

0.001286

0.001198

18

0.02473

GO:1903306

negative regulation of regulated secretory pathway

8/728

31/21069

7.616e-06

0.002055

0.001915

8

0.01099

GO:0051056

regulation of small GTPase mediated signal transduction

29/728

343/21069

9.486e-06

0.002418

0.002252

29

0.03984

GO:0002477

antigen processing and presentation of exogenous peptide antigen via MHC class Ib

7/728

24/21069

1.183e-05

0.002855

0.00266

7

0.009615

GO:0032816

positive regulation of natural killer cell activation

8/728

37/21069

3.103e-05

0.007118

0.00663

8

0.01099

GO:0002475

antigen processing and presentation via MHC class Ib

8/728

40/21069

5.64e-05

0.01232

0.01148

8

0.01099

GO:0002476

antigen processing and presentation of endogenous peptide antigen via MHC class Ib

7/728

31/21069

7.277e-05

0.01452

0.01352

7

0.009615

GO:0043302

positive regulation of leukocyte degranulation

7/728

31/21069

7.277e-05

0.01452

0.01352

7

0.009615

GO:0098742

cell-cell adhesion via plasma-membrane adhesion molecules

24/728

293/21069

8.98e-05

0.01717

0.01599

24

0.03297

GO:0046580

negative regulation of Ras protein signal transduction

9/728

55/21069

0.0001023

0.01877

0.01748

9

0.01236

GO:0002428

antigen processing and presentation of peptide antigen via MHC class Ib

7/728

33/21069

0.0001113

0.01964

0.0183

7

0.009615

GO:0045953

negative regulation of natural killer cell mediated cytotoxicity

12/728

98/21069

0.0001417

0.02399

0.02234

12

0.01648

GO:0007411

axon guidance

21/728

248/21069

0.0001533

0.02399

0.02234

21

0.02885

GO:0002716

negative regulation of natural killer cell mediated immunity

12/728

99/21069

0.0001562

0.02399

0.02234

12

0.01648

GO:0071709

membrane assembly

10/728

71/21069

0.0001568

0.02399

0.02234

10

0.01374

GO:0097485

neuron projection guidance

21/728

249/21069

0.0001621

0.02399

0.02235

21

0.02885

GO:0007409

axonogenesis

32/728

468/21069

0.0002088

0.02903

0.02704

32

0.04396

GO:0007158

neuron cell-cell adhesion

5/728

17/21069

0.0002127

0.02903

0.02704

5

0.006868

GO:0046578

regulation of Ras protein signal transduction

19/728

218/21069

0.0002151

0.02903

0.02704

19

0.0261

GO:0050770

regulation of axonogenesis

16/728

168/21069

0.0002456

0.03096

0.02884

16

0.02198

GO:0044091

membrane biogenesis

10/728

75/21069

0.0002488

0.03096

0.02884

10

0.01374

GO:0010727

negative regulation of hydrogen peroxide metabolic process

4/728

10/21069

0.0002513

0.03096

0.02884

4

0.005495

GO:0007605

sensory perception of sound

16/728

169/21069

0.0002627

0.03096

0.02884

16

0.02198

GO:0051058

negative regulation of small GTPase mediated signal transduction

9/728

62/21069

0.0002632

0.03096

0.02884

9

0.01236

GO:0001911

negative regulation of leukocyte mediated cytotoxicity

12/728

105/21069

0.0002733

0.03135

0.0292

12

0.01648

GO:0030101

natural killer cell activation

15/728

155/21069

0.0003196

0.03576

0.03331

15

0.0206

GO:0031342

negative regulation of cell killing

12/728

108/21069

0.0003555

0.03844

0.03581

12

0.01648

GO:0045921

positive regulation of exocytosis

11/728

93/21069

0.0003607

0.03844

0.03581

11

0.01511

GO:0060537

muscle tissue development

30/728

442/21069

0.0003686

0.03844

0.03581

30

0.04121

GO:0002323

natural killer cell activation involved in immune response

7/728

40/21069

0.0003939

0.03954

0.03683

7

0.009615

GO:0051250

negative regulation of lymphocyte activation

19/728

229/21069

0.000401

0.03954

0.03683

19

0.0261

GO:0009100

glycoprotein metabolic process

29/728

424/21069

0.0004051

0.03954

0.03683

29

0.03984

GO:0017157

regulation of exocytosis

19/728

230/21069

0.0004233

0.04046

0.03769

19

0.0261

GO:0050954

sensory perception of mechanical stimulus

17/728

197/21069

0.0005086

0.04762

0.04436

17

0.02335

GO:0010728

regulation of hydrogen peroxide biosynthetic process

4/728

12/21069

0.0005606

0.05043

0.04697

4

0.005495

GO:0097105

presynaptic membrane assembly

4/728

12/21069

0.0005606

0.05043

0.04697

4

0.005495

GO:0001913

T cell mediated cytotoxicity

12/728

115/21069

0.0006316

0.05346

0.04979

12

0.01648

GO:0007018

microtubule-based movement

29/728

436/21069

0.000634

0.05346

0.04979

29

0.03984

GO:0002369

T cell cytokine production

8/728

56/21069

0.0006408

0.05346

0.04979

8

0.01099

GO:0002724

regulation of T cell cytokine production

8/728

56/21069

0.0006408

0.05346

0.04979

8

0.01099

GO:0099068

postsynapse assembly

6/728

32/21069

0.0007005

0.05624

0.05239

6

0.008242

GO:0002486

antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent

7/728

44/21069

0.0007184

0.05624

0.05239

7

0.009615

GO:0007157

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules

8/728

57/21069

0.0007232

0.05624

0.05239

8

0.01099

GO:0071320

cellular response to cAMP

8/728

57/21069

0.0007232

0.05624

0.05239

8

0.01099

GO:0051549

positive regulation of keratinocyte migration

4/728

13/21069

0.0007876

0.05829

0.05429

4

0.005495

GO:0097090

presynaptic membrane organization

4/728

13/21069

0.0007876

0.05829

0.05429

4

0.005495

GO:0099150

regulation of postsynaptic specialization assembly

4/728

13/21069

0.0007876

0.05829

0.05429

4

0.005495

GO:1903307

positive regulation of regulated secretory pathway

8/728

58/21069

0.0008139

0.05914

0.05509

8

0.01099

GO:0002695

negative regulation of leukocyte activation

20/728

262/21069

0.0008249

0.05914

0.05509

20

0.02747

GO:0060249

anatomical structure homeostasis

25/728

362/21069

0.0008627

0.06054

0.05639

25

0.03434

GO:0043087

regulation of GTPase activity

28/728

424/21069

0.0008709

0.06054

0.05639

28

0.03846

GO:0002347

response to tumor cell

8/728

59/21069

0.0009136

0.06256

0.05827

8

0.01099

GO:0034329

cell junction assembly

30/728

468/21069

0.000933

0.06285

0.05855

30

0.04121

GO:0045954

positive regulation of natural killer cell mediated cytotoxicity

7/728

46/21069

0.0009453

0.06285

0.05855

7

0.009615

GO:0050866

negative regulation of cell activation

21/728

285/21069

0.0009726

0.06292

0.05861

21

0.02885

GO:0098698

postsynaptic specialization assembly

5/728

23/21069

0.0009736

0.06292

0.05861

5

0.006868

GO:0045824

negative regulation of innate immune response

14/728

156/21069

0.001056

0.06663

0.06207

14

0.01923

GO:0007019

microtubule depolymerization

7/728

47/21069

0.001078

0.06663

0.06207

7

0.009615

GO:0060119

inner ear receptor cell development

7/728

47/21069

0.001078

0.06663

0.06207

7

0.009615

GO:0014706

striated muscle tissue development

20/728

268/21069

0.001089

0.06663

0.06207

20

0.02747

GO:0060117

auditory receptor cell development

5/728

24/21069

0.001195

0.07215

0.06721

5

0.006868

GO:0048738

cardiac muscle tissue development

19/728

251/21069

0.001215

0.07241

0.06745

19

0.0261

GO:0051047

positive regulation of secretion

23/728

333/21069

0.001362

0.08012

0.07463

23

0.03159

GO:0002710

negative regulation of T cell mediated immunity

7/728

49/21069

0.001387

0.08057

0.07505

7

0.009615

GO:0060986

endocrine hormone secretion

8/728

63/21069

0.001414

0.0806

0.07508

8

0.01099

GO:0009812

flavonoid metabolic process

4/728

15/21069

0.001423

0.0806

0.07508

4

0.005495

GO:0006949

syncytium formation

9/728

78/21069

0.00145

0.08115

0.07559

9

0.01236

GO:0006887

exocytosis

26/728

397/21069

0.001473

0.0813

0.07573

26

0.03571

GO:0046545

development of primary female sexual characteristics

11/728

110/21069

0.001489

0.0813

0.07573

11

0.01511

GO:0046660

female sex differentiation

12/728

127/21069

0.001515

0.08176

0.07616

12

0.01648

GO:0019835

cytolysis

6/728

37/21069

0.001552

0.08258

0.07692

6

0.008242

GO:0008038

neuron recognition

7/728

50/21069

0.001566

0.08258

0.07692

7

0.009615

GO:0071466

cellular response to xenobiotic stimulus

16/728

200/21069

0.001635

0.08439

0.07861

16

0.02198

GO:0006029

proteoglycan metabolic process

10/728

95/21069

0.001637

0.08439

0.07861

10

0.01374

GO:0014074

response to purine-containing compound

13/728

146/21069

0.001688

0.08605

0.08016

13

0.01786

GO:0002028

regulation of sodium ion transport

10/728

96/21069

0.001772

0.08934

0.08322

10

0.01374

GO:0051547

regulation of keratinocyte migration

4/728

16/21069

0.001846

0.09126

0.08501

4

0.005495

GO:0035249

synaptic transmission, glutamatergic

11/728

113/21069

0.00185

0.09126

0.08501

11

0.01511

GO:0010634

positive regulation of epithelial cell migration

15/728

184/21069

0.001875

0.09151

0.08524

15

0.0206

GO:0002484

antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway

7/728

52/21069

0.001976

0.09445

0.08798

7

0.009615

GO:0051489

regulation of filopodium assembly

7/728

52/21069

0.001976

0.09445

0.08798

7

0.009615

GO:0099175

regulation of postsynapse organization

10/728

98/21069

0.002069

0.09693

0.09029

10

0.01374

GO:0001894

tissue homeostasis

21/728

303/21069

0.00207

0.09693

0.09029

21

0.02885

GO:0099054

presynapse assembly

7/728

53/21069

0.00221

0.1024

0.09542

7

0.009615

GO:0070593

dendrite self-avoidance

4/728

17/21069

0.002348

0.1077

0.1004

4

0.005495

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is MHC class Ib protein complex (7.090689e-05), and the highest (among the lowest 10) is catenin complex (0.004081384). The ratio is 57.55976, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 75 rows for significant categories.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0032398

MHC class Ib protein complex

7/755

14/22283

1.39e-07

7.091e-05

6.366e-05

7

0.009272

GO:0016010

dystrophin-associated glycoprotein complex

7/755

20/22283

2.628e-06

0.0004887

0.0004388

7

0.009272

GO:0098984

neuron to neuron synapse

32/755

383/22283

2.875e-06

0.0004887

0.0004388

32

0.04238

GO:0042383

sarcolemma

17/755

147/22283

1.052e-05

0.001206

0.001083

17

0.02252

GO:0090665

glycoprotein complex

7/755

25/22283

1.405e-05

0.001206

0.001083

7

0.009272

GO:0032279

asymmetric synapse

29/755

357/22283

1.419e-05

0.001206

0.001083

29

0.03841

GO:0014069

postsynaptic density

28/755

351/22283

2.756e-05

0.002008

0.001803

28

0.03709

GO:0099572

postsynaptic specialization

29/755

374/22283

3.358e-05

0.002141

0.001922

29

0.03841

GO:0005938

cell cortex

26/755

326/22283

5.295e-05

0.003

0.002694

26

0.03444

GO:0016342

catenin complex

7/755

32/22283

8.003e-05

0.004081

0.003664

7

0.009272

GO:0005858

axonemal dynein complex

6/755

24/22283

0.0001183

0.005486

0.004926

6

0.007947

GO:0098858

actin-based cell projection

21/755

253/22283

0.0001557

0.006616

0.00594

21

0.02781

GO:0030863

cortical cytoskeleton

13/755

120/22283

0.0002186

0.008576

0.0077

13

0.01722

GO:0030864

cortical actin cytoskeleton

11/755

92/22283

0.0002783

0.01014

0.009104

11

0.01457

GO:0036157

outer dynein arm

4/755

11/22283

0.0003567

0.01176

0.01056

4

0.005298

GO:0032421

stereocilium bundle

9/755

66/22283

0.0003689

0.01176

0.01056

9

0.01192

GO:0030175

filopodium

13/755

128/22283

0.0004129

0.01224

0.01099

13

0.01722

GO:0019897

extrinsic component of plasma membrane

16/755

180/22283

0.0004319

0.01224

0.01099

16

0.02119

GO:0032420

stereocilium

8/755

57/22283

0.0006371

0.0171

0.01535

8

0.0106

GO:0042612

MHC class I protein complex

7/755

46/22283

0.0008437

0.02151

0.01932

7

0.009272

GO:0055038

recycling endosome membrane

12/755

138/22283

0.002605

0.06326

0.05679

12

0.01589

GO:0097060

synaptic membrane

25/755

408/22283

0.003372

0.07817

0.07019

25

0.03311

GO:0031252

cell leading edge

27/755

457/22283

0.003898

0.08643

0.0776

27

0.03576

GO:1990752

microtubule end

5/755

33/22283

0.00476

0.1011

0.09081

5

0.006623

GO:0099568

cytoplasmic region

19/755

294/22283

0.005682

0.1159

0.1041

19

0.02517

GO:0055037

recycling endosome

17/755

254/22283

0.006151

0.1207

0.1083

17

0.02252

GO:0034703

cation channel complex

16/755

236/22283

0.006856

0.1289

0.1157

16

0.02119

GO:0031256

leading edge membrane

14/755

196/22283

0.007114

0.1289

0.1157

14

0.01854

GO:0034702

ion channel complex

20/755

323/22283

0.00733

0.1289

0.1157

20

0.02649

GO:0098978

glutamatergic synapse

21/755

354/22283

0.009699

0.1635

0.1468

21

0.02781

GO:0032587

ruffle membrane

9/755

106/22283

0.009938

0.1635

0.1468

9

0.01192

GO:0030286

dynein complex

6/755

56/22283

0.01143

0.1822

0.1636

6

0.007947

GO:0044304

main axon

7/755

74/22283

0.01259

0.1946

0.1747

7

0.009272

GO:0044753

amphisome

3/755

15/22283

0.013

0.195

0.1751

3

0.003974

GO:0032838

plasma membrane bounded cell projection cytoplasm

16/755

255/22283

0.01372

0.2

0.1795

16

0.02119

GO:0034705

potassium channel complex

8/755

94/22283

0.01446

0.2049

0.1839

8

0.0106

GO:0043034

costamere

3/755

16/22283

0.0156

0.2124

0.1907

3

0.003974

GO:0005912

adherens junction

13/755

195/22283

0.01583

0.2124

0.1907

13

0.01722

GO:0030055

cell-substrate junction

26/755

493/22283

0.01799

0.2298

0.2063

26

0.03444

GO:0097730

non-motile cilium

12/755

178/22283

0.01844

0.2298

0.2063

12

0.01589

GO:0098688

parallel fiber to Purkinje cell synapse

3/755

17/22283

0.01848

0.2298

0.2063

3

0.003974

GO:0098562

cytoplasmic side of membrane

14/755

222/22283

0.0195

0.2298

0.2063

14

0.01854

GO:0019898

extrinsic component of membrane

19/755

335/22283

0.02051

0.2298

0.2063

19

0.02517

GO:0097731

9+0 non-motile cilium

10/755

140/22283

0.02098

0.2298

0.2063

10

0.01325

GO:0030016

myofibril

15/755

246/22283

0.02099

0.2298

0.2063

15

0.01987

GO:0005930

axoneme

11/755

161/22283

0.02146

0.2298

0.2063

11

0.01457

GO:0032045

guanyl-nucleotide exchange factor complex

3/755

18/22283

0.02163

0.2298

0.2063

3

0.003974

GO:0044305

calyx of Held

3/755

18/22283

0.02163

0.2298

0.2063

3

0.003974

GO:0097014

ciliary plasm

11/755

162/22283

0.02234

0.2325

0.2088

11

0.01457

GO:0008076

voltage-gated potassium channel complex

7/755

84/22283

0.0238

0.2428

0.218

7

0.009272

GO:0043204

perikaryon

11/755

168/22283

0.02824

0.2766

0.2483

11

0.01457

GO:0043292

contractile fiber

15/755

256/22283

0.02864

0.2766

0.2483

15

0.01987

GO:0005828

kinetochore microtubule

3/755

20/22283

0.02874

0.2766

0.2483

3

0.003974

GO:0032426

stereocilium tip

3/755

21/22283

0.03271

0.2861

0.2569

3

0.003974

GO:0098862

cluster of actin-based cell projections

11/755

172/22283

0.03274

0.2861

0.2569

11

0.01457

GO:0030672

synaptic vesicle membrane

9/755

130/22283

0.03294

0.2861

0.2569

9

0.01192

GO:0099501

exocytic vesicle membrane

9/755

130/22283

0.03294

0.2861

0.2569

9

0.01192

GO:0031594

neuromuscular junction

6/755

71/22283

0.03309

0.2861

0.2569

6

0.007947

GO:0001726

ruffle

12/755

194/22283

0.0331

0.2861

0.2569

12

0.01589

GO:0001917

photoreceptor inner segment

6/755

72/22283

0.0351

0.2977

0.2673

6

0.007947

GO:0030315

T-tubule

5/755

54/22283

0.03561

0.2977

0.2673

5

0.006623

GO:0150034

distal axon

16/755

290/22283

0.03912

0.3102

0.2785

16

0.02119

GO:0032154

cleavage furrow

5/755

56/22283

0.04074

0.3102

0.2785

5

0.006623

GO:0060076

excitatory synapse

5/755

56/22283

0.04074

0.3102

0.2785

5

0.006623

GO:0035371

microtubule plus-end

3/755

23/22283

0.04145

0.3102

0.2785

3

0.003974

GO:0099240

intrinsic component of synaptic membrane

11/755

179/22283

0.0418

0.3102

0.2785

11

0.01457

GO:0032437

cuticular plate

2/755

10/22283

0.04308

0.3102

0.2785

2

0.002649

GO:0098981

cholinergic synapse

2/755

10/22283

0.04308

0.3102

0.2785

2

0.002649

GO:0044306

neuron projection terminus

9/755

137/22283

0.04372

0.3102

0.2785

9

0.01192

GO:0035097

histone methyltransferase complex

6/755

76/22283

0.04394

0.3102

0.2785

6

0.007947

GO:0045211

postsynaptic membrane

16/755

296/22283

0.04564

0.3102

0.2785

16

0.02119

GO:0030017

sarcomere

13/755

227/22283

0.04619

0.3102

0.2785

13

0.01722

GO:0032433

filopodium tip

3/755

24/22283

0.04622

0.3102

0.2785

3

0.003974

GO:0030018

Z disc

9/755

139/22283

0.04719

0.3102

0.2785

9

0.01192

GO:0032153

cell division site

6/755

78/22283

0.04884

0.3102

0.2785

6

0.007947

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

No significant results were found in DO.

4.3 Network of Cancer Genes

No significant results were found in NCG.